Ocimum sanctum (ocimum_sanctum)
/
Imported from atlas release summary for Ocimum sanctum.
1854
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1854
Candidate Genes
C4H
6.98%
BAHD
6.15%
C3'H/CYP98A
5.31%
CYP76
4.28%
4CL
4.05%
UGT
3.79%
IFS
3.23%
POD
3.21%
Other Families
63.0%
More Families (96)
7DLGT
139
2.98%
DWF4/CYP90B1
123
2.63%
UFGT
120
2.57%
F3'H/CYP75B
118
2.53%
F3H
105
2.25%
T3O
98
2.1%
TPS
94
2.01%
T16H
89
1.91%
CAD
88
1.88%
NMT
86
1.84%
G8O/G8H
79
1.69%
GES
78
1.67%
CODM/T6ODM
76
1.63%
CYP71
73
1.56%
STR
69
1.48%
LAC
66
1.41%
BR6OX2/CYP85A2
63
1.35%
CAS
61
1.31%
FNS
55
1.18%
F5H/CYP84A
54
1.16%
HCT
50
1.07%
SMT1/SMT2/SMT3
45
0.96%
H6H
42
0.9%
IO
42
0.9%
TRI/TRII
39
0.84%
GS
38
0.81%
IFR
37
0.79%
DFR
37
0.79%
RAS
37
0.79%
PYKS
36
0.77%
PMT
36
0.77%
F3'5'H/CYP75A
35
0.75%
CSE
35
0.75%
CYP90D1
35
0.75%
CPD/CYP90A1
30
0.64%
COMT
28
0.6%
SLS
27
0.58%
7DLH
27
0.58%
PAL
27
0.58%
CCR
27
0.58%
BBE
24
0.51%
NCS
23
0.49%
8HGO
23
0.49%
ANS/LDOX
23
0.49%
TAT
23
0.49%
ANR
19
0.41%
LAMT
18
0.39%
16OMT
18
0.39%
SGD
16
0.34%
COR
15
0.32%
FPPS
15
0.32%
CYP80B1
14
0.3%
ROT3/CYP90C1
14
0.3%
CHS
13
0.28%
CCoAOMT
13
0.28%
CPR
13
0.28%
BR6OX1/CYP85A1
13
0.28%
6OMT_4OMT_SOMT
12
0.26%
MPO
12
0.26%
HPPR
11
0.24%
GGPPS
11
0.24%
DXS
11
0.24%
CYP51G1
10
0.21%
ISY
9
0.19%
SQE
9
0.19%
AACT
9
0.19%
HMGR
9
0.19%
CYP719
8
0.17%
CNMT
8
0.17%
TYDC_DDC
8
0.17%
SQS/FDFT1
7
0.15%
SMO1/SMO2
7
0.15%
HDR/IspH
6
0.13%
CHI
5
0.11%
MVD
5
0.11%
MVK
4
0.09%
ADC
3
0.06%
TDC
3
0.06%
CYP80F1
3
0.06%
FLS
3
0.06%
HMGS
3
0.06%
IDI
3
0.06%
CMK/IspE
3
0.06%
XMT_MXMT_DXMT
2
0.04%
DET2
2
0.04%
FK
2
0.04%
CPI1
2
0.04%
DXR
2
0.04%
PMK
2
0.04%
DWF5
1
0.02%
DWF7
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
MDS/IspF
1
0.02%
MCT/IspD
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 626 | 20 | BAHD (219) | View species results |
| Alkaloid pathway | 406 | 27 | GES (68) | View species results |
| Phenylpropanoid pathway | 380 | 13 | POD (132) | View species results |
| Flavonoid pathway | 193 | 13 | UFGT (88) | View species results |
| Rosmarinic acid pathway | 160 | 7 | 4CL (45) | View species results |
| Steroid pathway | 89 | 10 | CAS (44) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1880 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 374 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ocimum_sanctum_Ote100180980001 | Terpenoid | BAHD | low | borderline | BAHD__00020__sp_K4D9Y4_ASAT3_SOLLC |
| ocimum_sanctum_Ote100180980011 | Terpenoid | BAHD | low | borderline | BAHD__00024__sp_O23393_BIA1_ARATH |
| ocimum_sanctum_Ote100181180041 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| ocimum_sanctum_Ote100186180001 | Terpenoid | BAHD | low | borderline | BAHD__00024__sp_O23393_BIA1_ARATH |
| ocimum_sanctum_Ote100186240001 | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| ocimum_sanctum_Ote100186520081 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| ocimum_sanctum_Ote100191440001 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| ocimum_sanctum_Ote100192270031 | Terpenoid | BAHD | low | borderline | BAHD__00024__sp_O23393_BIA1_ARATH |
| ocimum_sanctum_Ote100192450131 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| ocimum_sanctum_Ote100195780011 | Terpenoid | BAHD | low | borderline | BAHD__00024__sp_O23393_BIA1_ARATH |
| ocimum_sanctum_Ote100197650051 | Terpenoid | BAHD | medium | pass | BAHD__00051__sp_Q7XA86_ZDH11_ARATH |
| ocimum_sanctum_Ote100200400131 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| ocimum_sanctum_Ote100200450021 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| ocimum_sanctum_Ote100200450031 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| ocimum_sanctum_Ote100202860061 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| ocimum_sanctum_Ote100203680301 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| ocimum_sanctum_Ote100203960011 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| ocimum_sanctum_Ote100208300011 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| ocimum_sanctum_Ote100208320001 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| ocimum_sanctum_Ote100208870001 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| ocimum_sanctum_Ote100208870011 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| ocimum_sanctum_Ote100209230011 | Terpenoid | BAHD | low | borderline | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| ocimum_sanctum_Ote100209640021 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| ocimum_sanctum_Ote100209640031 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| ocimum_sanctum_Ote100209640051 | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| ocimum_sanctum_Ote100210110001 | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| ocimum_sanctum_Ote100210170031 | Terpenoid | BAHD | medium | pass | BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC |
| ocimum_sanctum_Ote100210850141 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| ocimum_sanctum_Ote100212550011 | Terpenoid | BAHD | medium | pass | BAHD__00078__sp_Q9LHS7_GPAT7_ARATH |
| ocimum_sanctum_Ote100213130001 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| ocimum_sanctum_Ote100213130011 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| ocimum_sanctum_Ote100213590011 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| ocimum_sanctum_Ote100214300021 | Terpenoid | BAHD | medium | pass | BAHD__00030__sp_O80816_GLC_ARATH |
| ocimum_sanctum_Ote100216670011 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |
| ocimum_sanctum_Ote100216670012 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |
| ocimum_sanctum_Ote100216940001 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| ocimum_sanctum_Ote100216940011 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| ocimum_sanctum_Ote100216940021 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| ocimum_sanctum_Ote100216940031 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| ocimum_sanctum_Ote100216940041 | Terpenoid | BAHD | low | borderline | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| ocimum_sanctum_Ote100216960041 | Terpenoid | BAHD | medium | pass | BAHD__00063__sp_Q93VV0_ZDHC6_ARATH |
| ocimum_sanctum_Ote100217010001 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| ocimum_sanctum_Ote100217210021 | Terpenoid | BAHD | low | borderline | BAHD__00032__sp_P0DO84_AT_STRNX |
| ocimum_sanctum_Ote100218700071 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| ocimum_sanctum_Ote100218850031 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| ocimum_sanctum_Ote100218850101 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| ocimum_sanctum_Ote100221300101 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| ocimum_sanctum_Ote100222470071 | Terpenoid | BAHD | medium | pass | BAHD__00084__sp_Q9M115_ZDH16_ARATH |
| ocimum_sanctum_Ote100223140061 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| ocimum_sanctum_Ote100223450191 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |