PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.98% Phenylpropanoid pathway 19.22% Alkaloid pathway 18.22% Rosmarinic acid pathway 13.42% Flavonoid pathway 11.65% Steroid pathway 5.51%
Family Distribution
C4H 8.09% C3'H/CYP98A 6.96% BAHD 5.67% CYP76 5.07% T3O 4.27% IFS 4.13% UGT 3.58% 4CL 3.4%
Other Families 58.84%
More Families (96)
7DLGT 189 3.35% UFGT 179 3.17% POD 142 2.52% F3'H/CYP75B 141 2.5% DWF4/CYP90B1 129 2.28% F3H 119 2.11% BR6OX2/CYP85A2 109 1.93% HCT 95 1.68% NMT 93 1.65% TPS 85 1.51% CYP71 83 1.47% CODM/T6ODM 81 1.43% RAS 74 1.31% CAS 72 1.28% BBE 71 1.26% LAC 69 1.22% GES 68 1.2% STR 66 1.17% CAD 64 1.13% SMT1/SMT2/SMT3 62 1.1% PMT 58 1.03% CYP90D1 58 1.03% G8O/G8H 57 1.01% T16H 55 0.97% CYP51G1 53 0.94% TAT 49 0.87% FNS 46 0.81% H6H 45 0.8% LAMT 40 0.71% COMT 38 0.67% F5H/CYP84A 38 0.67% PYKS 37 0.66% 16OMT 37 0.66% IFR 37 0.66% CSE 35 0.62% TRI/TRII 34 0.6% 7DLH 34 0.6% F3'5'H/CYP75A 34 0.6% IO 33 0.58% CPD/CYP90A1 32 0.57% NCS 31 0.55% GS 29 0.51% SLS 29 0.51% ANR 27 0.48% SGD 22 0.39% FPPS 22 0.39% BR6OX1/CYP85A1 21 0.37% CYP80B1 18 0.32% CCR 15 0.27% CYP719 13 0.23% COR 13 0.23% 8HGO 13 0.23% ANS/LDOX 13 0.23% CHS 12 0.21% DFR 12 0.21% AACT 12 0.21% ROT3/CYP90C1 11 0.19% MPO 10 0.18% PAL 9 0.16% SQS/FDFT1 9 0.16% GGPPS 9 0.16% TYDC_DDC 8 0.14% CCoAOMT 8 0.14% CNMT 7 0.12% XMT_MXMT_DXMT 7 0.12% HMGR 7 0.12% 6OMT_4OMT_SOMT 6 0.11% CPR 6 0.11% SQE 6 0.11% DXS 6 0.11% CYP80F1 5 0.09% HPPR 5 0.09% MVK 5 0.09% DXR 5 0.09% CHI 4 0.07% HDR/IspH 4 0.07% ISY 3 0.05% FLS 3 0.05% SMO1/SMO2 3 0.05% CPI1 3 0.05% HDS/IspG 3 0.05% IDI 3 0.05% MVD 3 0.05% ADC 2 0.04% DET2 2 0.04% FK 2 0.04% DWF1 2 0.04% HYD1 2 0.04% MCT/IspD 2 0.04% PMK 2 0.04% HMGS 2 0.04% DWF5 1 0.02% DWF7 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
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Gene Pathway Family Confidence Status
origanum_vulgare_122131.g2.t1 Steroid FK low borderline
origanum_vulgare_584.g240.t1 Steroid FK medium pass