PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
origanum_vulgare_1027.g63.t1 Alkaloid GS low borderline
origanum_vulgare_105250.g1.t1 Alkaloid GS medium pass
origanum_vulgare_1122.g64.t1 Alkaloid GS low borderline
origanum_vulgare_115453.g1.t1 Alkaloid GS low borderline
origanum_vulgare_118259.g5.t1 Alkaloid GS high pass
origanum_vulgare_118259.g5.t1.1.5db0b4b1 Alkaloid GS high pass
origanum_vulgare_125066.g4.t1 Alkaloid GS high pass
origanum_vulgare_125066.g4.t1.1.5db0b4c7 Alkaloid GS high pass
origanum_vulgare_125066.g4.t1.2.5db0b4c7 Alkaloid GS high pass
origanum_vulgare_216168.g1.t1 Alkaloid GS high pass
origanum_vulgare_216172.g1.t1 Alkaloid GS high pass
origanum_vulgare_281.g2.t1_281.g3.t1 Alkaloid GS medium pass
origanum_vulgare_399.g124.t1 Alkaloid GS low borderline
origanum_vulgare_402.g69.t1 Alkaloid GS high pass
origanum_vulgare_402.g70.t1 Alkaloid GS medium pass
origanum_vulgare_402.g73.t1 Alkaloid GS high pass
origanum_vulgare_424.g57.t1 Alkaloid GS low borderline
origanum_vulgare_424.g58.t1 Alkaloid GS low borderline
origanum_vulgare_453.g46.t1 Alkaloid GS low borderline
origanum_vulgare_476.g113.t1 Alkaloid GS low borderline
origanum_vulgare_489.g14.t1 Alkaloid GS low borderline
origanum_vulgare_641.g5.t1 Alkaloid GS medium pass
origanum_vulgare_645.g64.t1 Alkaloid GS high pass
origanum_vulgare_818.g66.t1 Alkaloid GS low borderline
origanum_vulgare_818.g68.t1 Alkaloid GS low borderline
origanum_vulgare_841.g215.t1 Alkaloid GS low borderline
origanum_vulgare_88621.g2.t1 Alkaloid GS low borderline
origanum_vulgare_943.g13.t1 Alkaloid GS high pass
origanum_vulgare_943.g16.t1 Alkaloid GS high pass