PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status Best Target
origanum_vulgare_1053.g10.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_1127.g12.t1 Alkaloid SLS low borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_116956.g1.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_117050.g1.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_119447.g3.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_124463.g16.t1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
origanum_vulgare_127106.g2.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_229.g165.t1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
origanum_vulgare_229.g166.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_229.g167.t1_229.g168.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_229.g171.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_264.g17.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_264.g275.t1_264.g276.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_264.g277.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_264.g294.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_264.g427.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_264.g428.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_438.g9.t1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
origanum_vulgare_458.g3.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_458.g3.t1.1.5db0b523 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_458.g3.t1.2.5db0b523 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_458.g3.t1.3.5db0b523 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_458.g3.t1.4.5db0b523 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_458.g3.t1.5.5db0b523 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_476.g112.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_507.g707.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_778.g4.t1 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
origanum_vulgare_854.g24.t1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
origanum_vulgare_905.g88.t1 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO