Origanum vulgare (origanum_vulgare)
Imported from atlas release summary for Origanum vulgare.
2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2086
Candidate Genes
C4H
8.09%
C3'H/CYP98A
6.96%
BAHD
5.67%
CYP76
5.07%
T3O
4.27%
IFS
4.13%
UGT
3.58%
4CL
3.4%
Other Families
58.84%
More Families (96)
7DLGT
189
3.35%
UFGT
179
3.17%
POD
142
2.52%
F3'H/CYP75B
141
2.5%
DWF4/CYP90B1
129
2.28%
F3H
119
2.11%
BR6OX2/CYP85A2
109
1.93%
HCT
95
1.68%
NMT
93
1.65%
TPS
85
1.51%
CYP71
83
1.47%
CODM/T6ODM
81
1.43%
RAS
74
1.31%
CAS
72
1.28%
BBE
71
1.26%
LAC
69
1.22%
GES
68
1.2%
STR
66
1.17%
CAD
64
1.13%
SMT1/SMT2/SMT3
62
1.1%
PMT
58
1.03%
CYP90D1
58
1.03%
G8O/G8H
57
1.01%
T16H
55
0.97%
CYP51G1
53
0.94%
TAT
49
0.87%
FNS
46
0.81%
H6H
45
0.8%
LAMT
40
0.71%
COMT
38
0.67%
F5H/CYP84A
38
0.67%
PYKS
37
0.66%
16OMT
37
0.66%
IFR
37
0.66%
CSE
35
0.62%
TRI/TRII
34
0.6%
7DLH
34
0.6%
F3'5'H/CYP75A
34
0.6%
IO
33
0.58%
CPD/CYP90A1
32
0.57%
NCS
31
0.55%
GS
29
0.51%
SLS
29
0.51%
ANR
27
0.48%
SGD
22
0.39%
FPPS
22
0.39%
BR6OX1/CYP85A1
21
0.37%
CYP80B1
18
0.32%
CCR
15
0.27%
CYP719
13
0.23%
COR
13
0.23%
8HGO
13
0.23%
ANS/LDOX
13
0.23%
CHS
12
0.21%
DFR
12
0.21%
AACT
12
0.21%
ROT3/CYP90C1
11
0.19%
MPO
10
0.18%
PAL
9
0.16%
SQS/FDFT1
9
0.16%
GGPPS
9
0.16%
TYDC_DDC
8
0.14%
CCoAOMT
8
0.14%
CNMT
7
0.12%
XMT_MXMT_DXMT
7
0.12%
HMGR
7
0.12%
6OMT_4OMT_SOMT
6
0.11%
CPR
6
0.11%
SQE
6
0.11%
DXS
6
0.11%
CYP80F1
5
0.09%
HPPR
5
0.09%
MVK
5
0.09%
DXR
5
0.09%
CHI
4
0.07%
HDR/IspH
4
0.07%
ISY
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
CPI1
3
0.05%
HDS/IspG
3
0.05%
IDI
3
0.05%
MVD
3
0.05%
ADC
2
0.04%
DET2
2
0.04%
FK
2
0.04%
DWF1
2
0.04%
HYD1
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
HMGS
2
0.04%
DWF5
1
0.02%
DWF7
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 667 | 19 | BAHD (241) | View species results |
| Phenylpropanoid pathway | 401 | 12 | POD (131) | View species results |
| Alkaloid pathway | 380 | 24 | 7DLGT (81) | View species results |
| Rosmarinic acid pathway | 280 | 7 | C4H (132) | View species results |
| Flavonoid pathway | 243 | 12 | UFGT (164) | View species results |
| Steroid pathway | 115 | 14 | CAS (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2563 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 489 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| origanum_vulgare_102044.g1.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_1032.g19.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_1032.g43.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_1032.g45.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_108254.g1.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_1120.g11.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_1144.g6.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_1144.g6.t1.1.5db0b4ae | Alkaloid | PMT | medium | pass |
| origanum_vulgare_114603.g3.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_119020.g3.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_122901.g2.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_123130.g1.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_124813.g1.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_124813.g3.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_124813.g4.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_124862.g10.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_124862.g9.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_125218.g14.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_125787.g2.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_126089.g2.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_126091.g2.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_126455.g3.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_207423.g1.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_207424.g1.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_207424.g2.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_207428.g1.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_207428.g2.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_207430.g1.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_207430.g2.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_229.g161.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_229.g162.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_263.g140.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_266.g82.t1_266.g83.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_424.g113.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_490.g73.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_533.g26.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_533.g27.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_533.g29.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_576.g10.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_576.g11.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_576.g14.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_576.g8.t1 | Alkaloid | PMT | low | borderline |
| origanum_vulgare_733.g65.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_733.g65.t1.1.5db0b544 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_763.g28.t1 | Alkaloid | PMT | medium | borderline |
| origanum_vulgare_763.g28.t1.1.5db0b546 | Alkaloid | PMT | medium | borderline |
| origanum_vulgare_763.g28.t1.2.5db0b546 | Alkaloid | PMT | medium | borderline |
| origanum_vulgare_763.g28.t1.3.5db0b546 | Alkaloid | PMT | medium | borderline |
| origanum_vulgare_816.g19.t1 | Alkaloid | PMT | medium | pass |
| origanum_vulgare_816.g35.t1 | Alkaloid | PMT | medium | pass |