Origanum vulgare (origanum_vulgare)
Imported from atlas release summary for Origanum vulgare.
2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2086
Candidate Genes
C4H
8.09%
C3'H/CYP98A
6.96%
BAHD
5.67%
CYP76
5.07%
T3O
4.27%
IFS
4.13%
UGT
3.58%
4CL
3.4%
Other Families
58.84%
More Families (96)
7DLGT
189
3.35%
UFGT
179
3.17%
POD
142
2.52%
F3'H/CYP75B
141
2.5%
DWF4/CYP90B1
129
2.28%
F3H
119
2.11%
BR6OX2/CYP85A2
109
1.93%
HCT
95
1.68%
NMT
93
1.65%
TPS
85
1.51%
CYP71
83
1.47%
CODM/T6ODM
81
1.43%
RAS
74
1.31%
CAS
72
1.28%
BBE
71
1.26%
LAC
69
1.22%
GES
68
1.2%
STR
66
1.17%
CAD
64
1.13%
SMT1/SMT2/SMT3
62
1.1%
PMT
58
1.03%
CYP90D1
58
1.03%
G8O/G8H
57
1.01%
T16H
55
0.97%
CYP51G1
53
0.94%
TAT
49
0.87%
FNS
46
0.81%
H6H
45
0.8%
LAMT
40
0.71%
COMT
38
0.67%
F5H/CYP84A
38
0.67%
PYKS
37
0.66%
16OMT
37
0.66%
IFR
37
0.66%
CSE
35
0.62%
TRI/TRII
34
0.6%
7DLH
34
0.6%
F3'5'H/CYP75A
34
0.6%
IO
33
0.58%
CPD/CYP90A1
32
0.57%
NCS
31
0.55%
GS
29
0.51%
SLS
29
0.51%
ANR
27
0.48%
SGD
22
0.39%
FPPS
22
0.39%
BR6OX1/CYP85A1
21
0.37%
CYP80B1
18
0.32%
CCR
15
0.27%
CYP719
13
0.23%
COR
13
0.23%
8HGO
13
0.23%
ANS/LDOX
13
0.23%
CHS
12
0.21%
DFR
12
0.21%
AACT
12
0.21%
ROT3/CYP90C1
11
0.19%
MPO
10
0.18%
PAL
9
0.16%
SQS/FDFT1
9
0.16%
GGPPS
9
0.16%
TYDC_DDC
8
0.14%
CCoAOMT
8
0.14%
CNMT
7
0.12%
XMT_MXMT_DXMT
7
0.12%
HMGR
7
0.12%
6OMT_4OMT_SOMT
6
0.11%
CPR
6
0.11%
SQE
6
0.11%
DXS
6
0.11%
CYP80F1
5
0.09%
HPPR
5
0.09%
MVK
5
0.09%
DXR
5
0.09%
CHI
4
0.07%
HDR/IspH
4
0.07%
ISY
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
CPI1
3
0.05%
HDS/IspG
3
0.05%
IDI
3
0.05%
MVD
3
0.05%
ADC
2
0.04%
DET2
2
0.04%
FK
2
0.04%
DWF1
2
0.04%
HYD1
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
HMGS
2
0.04%
DWF5
1
0.02%
DWF7
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 667 | 19 | BAHD (241) | View species results |
| Phenylpropanoid pathway | 401 | 12 | POD (131) | View species results |
| Alkaloid pathway | 380 | 24 | 7DLGT (81) | View species results |
| Rosmarinic acid pathway | 280 | 7 | C4H (132) | View species results |
| Flavonoid pathway | 243 | 12 | UFGT (164) | View species results |
| Steroid pathway | 115 | 14 | CAS (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2563 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 489 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| origanum_vulgare_739.g42.t1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| origanum_vulgare_739.g44.t1_739.g45.t1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| origanum_vulgare_79706.g3.t1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| origanum_vulgare_816.g146.t1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| origanum_vulgare_816.g146.t1.1.5db0b551 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| origanum_vulgare_841.g180.t1 | Alkaloid | GES | medium | pass | GES__00010__sp_Q93YV0_GES_ARATH |
| origanum_vulgare_841.g276.t1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| origanum_vulgare_841.g276.t1.1.5db0b562 | Alkaloid | GES | medium | pass | GES__00002__sp_C0KWV4_GRNLG_PERFH |
| origanum_vulgare_841.g277.t1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| origanum_vulgare_841.g280.t1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| origanum_vulgare_841.g280.t1.1.5db0b563 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| origanum_vulgare_841.g280.t1.2.5db0b563 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| origanum_vulgare_87922.g1.t1 | Alkaloid | GES | low | borderline | GES__00007__sp_Q6USK1_GERS_OCIBA |
| origanum_vulgare_905.g103.t1 | Alkaloid | GES | medium | pass | GES__00007__sp_Q6USK1_GERS_OCIBA |
| origanum_vulgare_948.g60.t1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| origanum_vulgare_948.g61.t1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| origanum_vulgare_948.g61.t1.1.5db0b56f | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| origanum_vulgare_95283.g1.t1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |