PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2086
Family-Level Assignments
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
origanum_vulgare_539.g88.t1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
origanum_vulgare_539.g97.t1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
origanum_vulgare_565.g1.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_565.g5.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_565.g5.t1.1.5db0b52f Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_584.g58.t1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
origanum_vulgare_584.g60.t1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
origanum_vulgare_703.g1.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_703.g10.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_703.g5.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_703.g7.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_703.g8.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_703.g9.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_800.g6.t1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
origanum_vulgare_800.g7.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_862.g46.t1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
origanum_vulgare_88915.g1.t1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
origanum_vulgare_905.g37.t1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
origanum_vulgare_905.g37.t1.1.5db0b56a Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH