PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2395
Candidate Protein Records
2086
Pathway-Level Records
5646
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
origanum_vulgare_699.g8.t1 Alkaloid T3O medium pass
origanum_vulgare_71058.g1.t1 Alkaloid T3O medium borderline
origanum_vulgare_739.g28.t1 Alkaloid T3O medium borderline
origanum_vulgare_739.g31.t1 Alkaloid T3O medium borderline
origanum_vulgare_739.g36.t1 Alkaloid T3O medium borderline
origanum_vulgare_739.g37.t1 Alkaloid T3O medium borderline
origanum_vulgare_739.g38.t1 Alkaloid T3O medium borderline
origanum_vulgare_745.g7.t1 Alkaloid T3O medium borderline
origanum_vulgare_826.g156.t1 Alkaloid T3O medium borderline
origanum_vulgare_826.g163.t1 Alkaloid T3O medium borderline
origanum_vulgare_826.g164.t1 Alkaloid T3O medium borderline
origanum_vulgare_826.g166.t1 Alkaloid T3O medium borderline
origanum_vulgare_826.g221.t1 Alkaloid T3O medium pass
origanum_vulgare_826.g221.t1.1.5db0b55d Alkaloid T3O medium pass
origanum_vulgare_826.g221.t1.2.5db0b55d Alkaloid T3O medium pass
origanum_vulgare_826.g221.t1.3.5db0b55d Alkaloid T3O medium pass
origanum_vulgare_826.g221.t1.4.5db0b55d Alkaloid T3O medium pass
origanum_vulgare_826.g221.t1.5.5db0b55d Alkaloid T3O medium pass
origanum_vulgare_826.g92.t1 Alkaloid T3O medium borderline
origanum_vulgare_842.g112.t1 Alkaloid T3O low borderline
origanum_vulgare_844.g78.t1 Alkaloid T3O medium borderline
origanum_vulgare_84785.g1.t1 Alkaloid T3O medium borderline
origanum_vulgare_854.g24.t1.1.5db0b555 Alkaloid T3O high pass
origanum_vulgare_85931.g1.t1 Alkaloid T3O medium borderline
origanum_vulgare_882.g10.t1 Alkaloid T3O medium borderline
origanum_vulgare_91369.g1.t1 Alkaloid T3O medium borderline
origanum_vulgare_92269.g2.t1 Alkaloid T3O medium borderline
origanum_vulgare_92269.g4.t1 Alkaloid T3O medium borderline
origanum_vulgare_928.g6.t1 Alkaloid T3O medium borderline
origanum_vulgare_933.g11.t1 Alkaloid T3O medium borderline
origanum_vulgare_933.g12.t1 Alkaloid T3O medium borderline
origanum_vulgare_941.g16.t1 Alkaloid T3O medium pass
origanum_vulgare_948.g27.t1 Alkaloid T3O low borderline
origanum_vulgare_94897.g1.t1 Alkaloid T3O medium borderline
origanum_vulgare_952.g3.t1 Alkaloid T3O medium borderline
origanum_vulgare_952.g5.t1 Alkaloid T3O medium borderline
origanum_vulgare_95283.g2.t1 Alkaloid T3O medium borderline
origanum_vulgare_95891.g1.t1 Alkaloid T3O medium borderline
origanum_vulgare_968.g8.t1 Alkaloid T3O medium borderline
origanum_vulgare_984.g43.t1 Alkaloid T3O medium borderline
origanum_vulgare_984.g44.t1 Alkaloid T3O medium borderline