PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
origanum_vulgare_128164.g2.t1 Terpenoid AACT medium borderline
origanum_vulgare_128165.g2.t1 Terpenoid AACT medium borderline
origanum_vulgare_128165.g2.t1.1.5db0b4dd Terpenoid AACT medium borderline
origanum_vulgare_230.g112.t1 Terpenoid AACT medium borderline
origanum_vulgare_427.g91.t1 Terpenoid AACT low borderline
origanum_vulgare_427.g91.t1.1.5db0b51c Terpenoid AACT low borderline
origanum_vulgare_454.g41.t1 Terpenoid AACT medium borderline
origanum_vulgare_547.g2.t1 Terpenoid AACT medium borderline
origanum_vulgare_547.g2.t1.1.5db0b52d Terpenoid AACT medium borderline
origanum_vulgare_547.g2.t1.2.5db0b52d Terpenoid AACT medium borderline
origanum_vulgare_547.g2.t1.3.5db0b52d Terpenoid AACT medium borderline
origanum_vulgare_878.g41.t1 Terpenoid AACT medium borderline
origanum_vulgare_102044.g1.t1 Terpenoid BAHD medium pass
origanum_vulgare_1032.g19.t1 Terpenoid BAHD medium pass
origanum_vulgare_1032.g43.t1 Terpenoid BAHD medium pass
origanum_vulgare_1032.g45.t1 Terpenoid BAHD medium pass
origanum_vulgare_1053.g9.t1 Terpenoid BAHD medium pass
origanum_vulgare_106332.g1.t1 Terpenoid BAHD low borderline
origanum_vulgare_106332.g6.t1 Terpenoid BAHD medium pass
origanum_vulgare_1066.g254.t1 Terpenoid BAHD low borderline
origanum_vulgare_1066.g255.t1 Terpenoid BAHD low borderline
origanum_vulgare_1066.g256.t1 Terpenoid BAHD low borderline
origanum_vulgare_1066.g9.t1 Terpenoid BAHD medium pass
origanum_vulgare_107638.g3.t1 Terpenoid BAHD medium pass
origanum_vulgare_108022.g4.t1 Terpenoid BAHD medium pass
origanum_vulgare_108022.g5.t1 Terpenoid BAHD medium pass
origanum_vulgare_108254.g1.t1 Terpenoid BAHD medium pass
origanum_vulgare_109473.g2.t1 Terpenoid BAHD medium pass
origanum_vulgare_109473.g3.t1 Terpenoid BAHD medium pass
origanum_vulgare_109647.g1.t1 Terpenoid BAHD low borderline
origanum_vulgare_109647.g1.t1.1.5db0b4a7 Terpenoid BAHD low borderline
origanum_vulgare_109647.g1.t1.2.5db0b4a7 Terpenoid BAHD low borderline
origanum_vulgare_110171.g1.t1 Terpenoid BAHD low borderline
origanum_vulgare_1105.g1.t1 Terpenoid BAHD low borderline
origanum_vulgare_1107.g90.t1 Terpenoid BAHD medium pass
origanum_vulgare_110724.g1.t1 Terpenoid BAHD low borderline
origanum_vulgare_111027.g2.t1 Terpenoid BAHD low borderline
origanum_vulgare_1113.g32.t1 Terpenoid BAHD low borderline
origanum_vulgare_1120.g11.t1 Terpenoid BAHD low borderline
origanum_vulgare_1122.g48.t1 Terpenoid BAHD medium pass
origanum_vulgare_112742.g4.t1 Terpenoid BAHD medium pass
origanum_vulgare_113357.g1.t1 Terpenoid BAHD medium pass
origanum_vulgare_113357.g2.t1 Terpenoid BAHD low borderline
origanum_vulgare_114603.g3.t1 Terpenoid BAHD medium pass
origanum_vulgare_114827.g1.t1 Terpenoid BAHD low borderline
origanum_vulgare_114827.g2.t1 Terpenoid BAHD medium pass
origanum_vulgare_114864.g4.t1 Terpenoid BAHD low borderline
origanum_vulgare_115550.g2.t1 Terpenoid BAHD medium pass
origanum_vulgare_1156.g11.t1 Terpenoid BAHD medium pass
origanum_vulgare_116437.g1.t1 Terpenoid BAHD medium pass