PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2395
Candidate Protein Records
2086
Pathway-Level Records
5646
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
origanum_vulgare_122809.g14.t1 Flavonoid UFGT medium pass
origanum_vulgare_122809.g15.t1 Flavonoid UFGT medium pass
origanum_vulgare_122809.g16.t1 Flavonoid UFGT medium pass
origanum_vulgare_122809.g8.t1 Flavonoid UFGT medium pass
origanum_vulgare_122809.g9.t1 Flavonoid UFGT medium pass
origanum_vulgare_123849.g1.t1 Flavonoid UFGT low borderline
origanum_vulgare_124770.g13.t1 Flavonoid UFGT medium pass
origanum_vulgare_124960.g14.t1 Flavonoid UFGT medium pass
origanum_vulgare_125053.g3.t1 Flavonoid UFGT high pass
origanum_vulgare_125208.g1.t1 Flavonoid UFGT low borderline
origanum_vulgare_125452.g1.t1 Flavonoid UFGT medium pass
origanum_vulgare_125495.g5.t1 Flavonoid UFGT medium pass
origanum_vulgare_125553.g10.t1 Flavonoid UFGT medium pass
origanum_vulgare_125553.g11.t1 Flavonoid UFGT medium pass
origanum_vulgare_125553.g5.t1 Flavonoid UFGT medium pass
origanum_vulgare_125553.g7.t1 Flavonoid UFGT medium pass
origanum_vulgare_125553.g8.t1 Flavonoid UFGT high pass
origanum_vulgare_125883.g2.t1 Flavonoid UFGT medium pass
origanum_vulgare_126074.g5.t1 Flavonoid UFGT high pass
origanum_vulgare_126173.g2.t1 Flavonoid UFGT high pass
origanum_vulgare_127184.g2.t1 Flavonoid UFGT medium pass
origanum_vulgare_127382.g3.t1 Flavonoid UFGT medium pass
origanum_vulgare_127487.g2.t1 Flavonoid UFGT medium pass
origanum_vulgare_127600.g2.t1 Flavonoid UFGT medium pass
origanum_vulgare_127600.g3.t1 Flavonoid UFGT medium pass
origanum_vulgare_127600.g5.t1 Flavonoid UFGT medium pass
origanum_vulgare_229.g145.t1 Flavonoid UFGT medium pass
origanum_vulgare_247.g250.t1 Flavonoid UFGT medium pass
origanum_vulgare_247.g281.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g288.t1 Flavonoid UFGT high pass
origanum_vulgare_256.g289.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g290.t1 Flavonoid UFGT high pass
origanum_vulgare_256.g291.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g293.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g294.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g295.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g296.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g297.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g298.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g299.t1 Flavonoid UFGT medium pass
origanum_vulgare_256.g342.t1 Flavonoid UFGT medium pass
origanum_vulgare_263.g214.t1 Flavonoid UFGT high pass
origanum_vulgare_263.g93.t1 Flavonoid UFGT medium pass
origanum_vulgare_264.g1.t1 Flavonoid UFGT high pass
origanum_vulgare_264.g20.t1 Flavonoid UFGT medium pass
origanum_vulgare_264.g21.t1 Flavonoid UFGT medium pass
origanum_vulgare_264.g22.t1 Flavonoid UFGT high pass
origanum_vulgare_300.g11.t1 Flavonoid UFGT high pass
origanum_vulgare_300.g13.t1 Flavonoid UFGT medium pass
origanum_vulgare_300.g15.t1 Flavonoid UFGT medium pass