PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
origanum_vulgare_1082.g1.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_1082.g2.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_1105.g2.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_1105.g5.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_1107.g14.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_1107.g4.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_1107.g6.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_1113.g10.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_1113.g9.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_113134.g1.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_113362.g1.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_114365.g2.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_116801.g1.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_117092.g1.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_119201.g1.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_119841.g4.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_120029.g4.t1 Alkaloid 7DLGT high pass
origanum_vulgare_120208.g3.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_120391.g1.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_120391.g4.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_120574.g1.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_120574.g2.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_120574.g3.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_120574.g4.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_121636.g1.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_121928.g10.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_121928.g12.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_121928.g14.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_121928.g16.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_122479.g2.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_122809.g13.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_122809.g14.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_122809.g15.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_122809.g16.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_122809.g8.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_122809.g9.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_123849.g1.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_124770.g13.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_124960.g14.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125053.g3.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125452.g1.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125484.g57.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125495.g5.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125553.g10.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_125553.g11.t1 Alkaloid 7DLGT medium pass
origanum_vulgare_125553.g5.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125553.g7.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125553.g8.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_125883.g2.t1 Alkaloid 7DLGT low borderline
origanum_vulgare_126074.g5.t1 Alkaloid 7DLGT low borderline