PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2086
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
origanum_vulgare_693.g7.t1 Flavonoid 4CL low borderline
origanum_vulgare_733.g45.t1 Flavonoid 4CL low borderline
origanum_vulgare_816.g34.t1 Flavonoid 4CL medium pass
origanum_vulgare_816.g34.t1.1.5db0b54e Flavonoid 4CL medium pass
origanum_vulgare_816.g34.t1.2.5db0b54e Flavonoid 4CL medium pass
origanum_vulgare_841.g188.t1 Flavonoid 4CL low borderline
origanum_vulgare_862.g21.t1 Flavonoid 4CL medium pass
origanum_vulgare_862.g21.t1.1.5db0b559 Flavonoid 4CL medium pass
origanum_vulgare_862.g33.t1 Flavonoid 4CL low borderline
origanum_vulgare_891.g26.t1 Flavonoid 4CL low borderline
origanum_vulgare_932.g3.t1 Flavonoid 4CL low borderline
origanum_vulgare_946.g14.t1 Flavonoid 4CL medium pass
origanum_vulgare_959.g1.t1 Flavonoid 4CL low borderline
origanum_vulgare_984.g1.t1 Flavonoid 4CL low borderline
origanum_vulgare_1048.g11.t1 Flavonoid ANR medium borderline
origanum_vulgare_1048.g13.t1 Flavonoid ANR medium borderline
origanum_vulgare_1048.g14.t1 Flavonoid ANR medium borderline
origanum_vulgare_1081.g3.t1 Flavonoid ANR medium borderline
origanum_vulgare_116949.g1.t1 Flavonoid ANR medium borderline
origanum_vulgare_125018.g21.t1 Flavonoid ANR medium borderline
origanum_vulgare_126372.g11.t1 Flavonoid ANR low borderline
origanum_vulgare_126372.g11.t1.1.5db0b4d2 Flavonoid ANR low borderline
origanum_vulgare_127074.g10.t1 Flavonoid ANR low borderline
origanum_vulgare_266.g152.t1 Flavonoid ANR medium borderline
origanum_vulgare_273.g14.t1 Flavonoid ANR medium pass
origanum_vulgare_362.g162.t1 Flavonoid ANR medium borderline
origanum_vulgare_429.g8.t1 Flavonoid ANR low borderline
origanum_vulgare_476.g36.t1 Flavonoid ANR medium borderline
origanum_vulgare_572.g104.t1 Flavonoid ANR medium borderline
origanum_vulgare_616.g19.t1 Flavonoid ANR medium borderline
origanum_vulgare_826.g243.t1 Flavonoid ANR low borderline
origanum_vulgare_860.g32.t1 Flavonoid ANR medium borderline
origanum_vulgare_860.g33.t1 Flavonoid ANR medium borderline
origanum_vulgare_860.g34.t1 Flavonoid ANR medium borderline
origanum_vulgare_860.g37.t1 Flavonoid ANR medium borderline
origanum_vulgare_860.g39.t1 Flavonoid ANR medium borderline
origanum_vulgare_860.g40.t1 Flavonoid ANR medium borderline
origanum_vulgare_860.g41.t1 Flavonoid ANR medium borderline
origanum_vulgare_906.g20.t1.1.5db0b567 Flavonoid ANR low borderline
origanum_vulgare_936.g13.t1 Flavonoid ANR low borderline
origanum_vulgare_971.g32.t1 Flavonoid ANR medium borderline
origanum_vulgare_101062.g1.t1 Flavonoid ANS/LDOX medium borderline
origanum_vulgare_101062.g1.t1.1.5db0b4a0 Flavonoid ANS/LDOX medium borderline
origanum_vulgare_264.g391.t1 Flavonoid ANS/LDOX medium borderline
origanum_vulgare_264.g394.t1 Flavonoid ANS/LDOX medium borderline
origanum_vulgare_304.g233.t1 Flavonoid ANS/LDOX medium borderline
origanum_vulgare_402.g195.t1 Flavonoid ANS/LDOX medium borderline
origanum_vulgare_461.g17.t1 Flavonoid ANS/LDOX medium pass
origanum_vulgare_461.g74.t1 Flavonoid ANS/LDOX medium borderline
origanum_vulgare_476.g164.t1 Flavonoid ANS/LDOX medium borderline