Origanum vulgare (origanum_vulgare)
Imported from atlas release summary for Origanum vulgare.
2395
Candidate Protein Records
2086
Pathway-Level Records
5646
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5646
Family-Level Calls
C4H
8.09%
C3'H/CYP98A
6.96%
BAHD
5.67%
CYP76
5.07%
T3O
4.27%
IFS
4.13%
UGT
3.58%
4CL
3.4%
Other Families
58.84%
More Families (96)
7DLGT
189
3.35%
UFGT
179
3.17%
POD
142
2.52%
F3'H/CYP75B
141
2.5%
DWF4/CYP90B1
129
2.28%
F3H
119
2.11%
BR6OX2/CYP85A2
109
1.93%
HCT
95
1.68%
NMT
93
1.65%
TPS
85
1.51%
CYP71
83
1.47%
CODM/T6ODM
81
1.43%
RAS
74
1.31%
CAS
72
1.28%
BBE
71
1.26%
LAC
69
1.22%
GES
68
1.2%
STR
66
1.17%
CAD
64
1.13%
SMT1/SMT2/SMT3
62
1.1%
PMT
58
1.03%
CYP90D1
58
1.03%
G8O/G8H
57
1.01%
T16H
55
0.97%
CYP51G1
53
0.94%
TAT
49
0.87%
FNS
46
0.81%
H6H
45
0.8%
LAMT
40
0.71%
COMT
38
0.67%
F5H/CYP84A
38
0.67%
PYKS
37
0.66%
16OMT
37
0.66%
IFR
37
0.66%
CSE
35
0.62%
TRI/TRII
34
0.6%
7DLH
34
0.6%
F3'5'H/CYP75A
34
0.6%
IO
33
0.58%
CPD/CYP90A1
32
0.57%
NCS
31
0.55%
GS
29
0.51%
SLS
29
0.51%
ANR
27
0.48%
SGD
22
0.39%
FPPS
22
0.39%
BR6OX1/CYP85A1
21
0.37%
CYP80B1
18
0.32%
CCR
15
0.27%
CYP719
13
0.23%
COR
13
0.23%
8HGO
13
0.23%
ANS/LDOX
13
0.23%
CHS
12
0.21%
DFR
12
0.21%
AACT
12
0.21%
ROT3/CYP90C1
11
0.19%
MPO
10
0.18%
PAL
9
0.16%
SQS/FDFT1
9
0.16%
GGPPS
9
0.16%
TYDC_DDC
8
0.14%
CCoAOMT
8
0.14%
CNMT
7
0.12%
XMT_MXMT_DXMT
7
0.12%
HMGR
7
0.12%
6OMT_4OMT_SOMT
6
0.11%
CPR
6
0.11%
SQE
6
0.11%
DXS
6
0.11%
CYP80F1
5
0.09%
HPPR
5
0.09%
MVK
5
0.09%
DXR
5
0.09%
CHI
4
0.07%
HDR/IspH
4
0.07%
ISY
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
CPI1
3
0.05%
HDS/IspG
3
0.05%
IDI
3
0.05%
MVD
3
0.05%
ADC
2
0.04%
DET2
2
0.04%
FK
2
0.04%
DWF1
2
0.04%
HYD1
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
HMGS
2
0.04%
DWF5
1
0.02%
DWF7
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 667 | 19 | BAHD (241) | View species results |
| Phenylpropanoid pathway | 401 | 12 | POD (131) | View species results |
| Alkaloid pathway | 380 | 24 | 7DLGT (81) | View species results |
| Rosmarinic acid pathway | 280 | 7 | C4H (132) | View species results |
| Flavonoid pathway | 243 | 12 | UFGT (164) | View species results |
| Steroid pathway | 115 | 14 | CAS (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2563 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 489 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| origanum_vulgare_1117.g1.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_1117.g1.t1.1.5db0b4aa | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_1156.g34.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_117058.g1.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_117058.g1.t1.1.5db0b4b0 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_121277.g2.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_122464.g3.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_123523.g1.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_124862.g2.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_124862.g2.t1.1.5db0b4c4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_125433.g54.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_125484.g24.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_126213.g10.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_126372.g22.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_126372.g23.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_126677.g12.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_126677.g12.t1.1.5db0b4d4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_126708.g1.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_127074.g14.t1_127074.g15.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_205281.g3.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_245.g34.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_250.g66.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_256.g205.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_256.g279.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_256.g279.t1.1.5db0b4fd | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_264.g489.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_265.g30.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_269.g269.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_272.g39.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_337.g9.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_397.g22.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_399.g52.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_399.g53.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_412.g10.t1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| origanum_vulgare_424.g21.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| origanum_vulgare_427.g25.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_432.g10.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_432.g9.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_459.g2.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_465.g23.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| origanum_vulgare_507.g155.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_507.g70.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_530.g35.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_530.g77.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_539.g112.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_584.g23.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_645.g116.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_645.g117.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_79351.g1.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| origanum_vulgare_822.g5.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |