PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2395
Candidate Protein Records
2086
Pathway-Level Records
5646
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
origanum_vulgare_304.g243.t1 Flavonoid F3H medium borderline
origanum_vulgare_376.g19.t1 Flavonoid F3H medium borderline
origanum_vulgare_397.g20.t1 Flavonoid F3H low borderline
origanum_vulgare_397.g21.t1 Flavonoid F3H low borderline
origanum_vulgare_402.g118.t1 Flavonoid F3H medium borderline
origanum_vulgare_402.g119.t1 Flavonoid F3H medium borderline
origanum_vulgare_402.g196.t1 Flavonoid F3H low borderline
origanum_vulgare_427.g2.t1 Flavonoid F3H medium borderline
origanum_vulgare_431.g9.t1 Flavonoid F3H medium borderline
origanum_vulgare_458.g4.t1 Flavonoid F3H medium borderline
origanum_vulgare_458.g69.t1 Flavonoid F3H low borderline
origanum_vulgare_458.g69.t1.1.5db0b526 Flavonoid F3H low borderline
origanum_vulgare_458.g69.t1.2.5db0b526 Flavonoid F3H low borderline
origanum_vulgare_461.g15.t1 Flavonoid F3H medium borderline
origanum_vulgare_461.g15.t1.1.5db0b523 Flavonoid F3H medium borderline
origanum_vulgare_461.g19.t1 Flavonoid F3H medium borderline
origanum_vulgare_461.g20.t1 Flavonoid F3H medium borderline
origanum_vulgare_463.g42.t1 Flavonoid F3H low borderline
origanum_vulgare_463.g7.t1 Flavonoid F3H medium borderline
origanum_vulgare_464.g4.t1 Flavonoid F3H medium borderline
origanum_vulgare_464.g4.t1.1.5db0b522 Flavonoid F3H medium borderline
origanum_vulgare_476.g43.t1 Flavonoid F3H medium borderline
origanum_vulgare_476.g43.t1.1.5db0b52c Flavonoid F3H medium borderline
origanum_vulgare_492.g5.t1 Flavonoid F3H medium pass
origanum_vulgare_507.g295.t1 Flavonoid F3H medium borderline
origanum_vulgare_507.g702.t1 Flavonoid F3H medium borderline
origanum_vulgare_507.g714.t1 Flavonoid F3H medium borderline
origanum_vulgare_539.g77.t1 Flavonoid F3H medium borderline
origanum_vulgare_563.g1.t1 Flavonoid F3H low borderline
origanum_vulgare_632.g5.t1 Flavonoid F3H medium borderline
origanum_vulgare_704.g20.t1 Flavonoid F3H medium borderline
origanum_vulgare_704.g23.t1 Flavonoid F3H medium borderline
origanum_vulgare_712.g6.t1 Flavonoid F3H medium borderline
origanum_vulgare_751.g15.t1 Flavonoid F3H medium borderline
origanum_vulgare_811.g2.t1 Flavonoid F3H medium borderline
origanum_vulgare_811.g5.t1 Flavonoid F3H medium borderline
origanum_vulgare_812.g28.t1 Flavonoid F3H medium borderline
origanum_vulgare_854.g25.t1 Flavonoid F3H medium borderline
origanum_vulgare_88951.g1.t1 Flavonoid F3H medium borderline
origanum_vulgare_91144.g1.t1 Flavonoid F3H medium borderline
origanum_vulgare_913.g21.t1 Flavonoid F3H medium borderline
origanum_vulgare_913.g23.t1 Flavonoid F3H medium borderline
origanum_vulgare_927.g13.t1 Flavonoid F3H medium borderline
origanum_vulgare_932.g30.t1 Flavonoid F3H medium borderline
origanum_vulgare_932.g31.t1 Flavonoid F3H medium borderline
origanum_vulgare_940.g10.t1 Flavonoid F3H low borderline
origanum_vulgare_263.g244.t1 Flavonoid FLS medium borderline
origanum_vulgare_267.g9.t1 Flavonoid FLS low borderline
origanum_vulgare_461.g18.t1 Flavonoid FLS low borderline
origanum_vulgare_104015.g4.t1 Flavonoid FNS medium borderline