PlantSME Plant secondary metabolism enzyme database

Oryza sativa.spZS97 (oryza_sativa_spzs97)

Imported from atlas release summary for Oryza sativa.spZS97.

2627
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.27% Alkaloid pathway 23.68% Phenylpropanoid pathway 18.65% Flavonoid pathway 13.51% Steroid pathway 7.84% Rosmarinic acid pathway 7.04%
Family Distribution
BAHD 6.13% C4H 5.82% C3'H/CYP98A 5.42% 4CL 3.96% POD 3.96% UGT 3.65% 7DLGT 3.4% UFGT 3.34%
Other Families 64.33%
More Families (97)
IFS 221 3.28% T3O 219 3.25% CYP76 198 2.94% NMT 192 2.85% F3'H/CYP75B 154 2.28% DWF4/CYP90B1 153 2.27% STR 127 1.88% CAD 123 1.82% SMT1/SMT2/SMT3 122 1.81% BR6OX2/CYP85A2 120 1.78% CAS 120 1.78% F3H 117 1.74% TPS 117 1.74% CYP71 107 1.59% GES 97 1.44% SGD 79 1.17% TRI/TRII 69 1.02% G8O/G8H 64 0.95% IFR 64 0.95% CODM/T6ODM 62 0.92% FNS 62 0.92% CCR 61 0.91% CYP90D1 61 0.91% ANR 60 0.89% GS 57 0.85% CSE 57 0.85% SLS 56 0.83% H6H 56 0.83% COMT 54 0.8% PYKS 53 0.79% PMT 52 0.77% T16H 52 0.77% BR6OX1/CYP85A1 51 0.76% LAC 49 0.73% F5H/CYP84A 48 0.71% HCT 45 0.67% RAS 44 0.65% NCS 42 0.62% 16OMT 42 0.62% IO 36 0.53% DFR 36 0.53% F3'5'H/CYP75A 36 0.53% CPD/CYP90A1 35 0.52% CHS 34 0.5% COR 32 0.47% CYP51G1 32 0.47% LAMT 29 0.43% PAL 27 0.4% BBE 26 0.39% 8HGO 25 0.37% FPPS 24 0.36% TAT 23 0.34% CNMT 22 0.33% 7DLH 22 0.33% ANS/LDOX 22 0.33% ROT3/CYP90C1 20 0.3% MVK 17 0.25% SQS/FDFT1 16 0.24% CYP719 15 0.22% CPR 15 0.22% AACT 15 0.22% MCT/IspD 14 0.21% MPO 13 0.19% XMT_MXMT_DXMT 13 0.19% CHI 13 0.19% GGPPS 13 0.19% SQE 10 0.15% HMGR 10 0.15% TYDC_DDC 9 0.13% TDC 9 0.13% CCoAOMT 9 0.13% SMO1/SMO2 9 0.13% CYP80B1 8 0.12% ADC 8 0.12% DXR 8 0.12% FLS 7 0.1% HPPR 7 0.1% HMGS 7 0.1% DXS 7 0.1% DWF5 6 0.09% MVD 6 0.09% HDS/IspG 6 0.09% HDR/IspH 6 0.09% CYP80F1 5 0.07% DWF7 5 0.07% FK 5 0.07% DWF1 5 0.07% PMK 5 0.07% ODC 4 0.06% 6OMT_4OMT_SOMT 4 0.06% MDS/IspF 4 0.06% ISY 3 0.04% DET2 3 0.04% GPPS 3 0.04% HYD1 2 0.03% CPI1 2 0.03% IDI 2 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 769 19 BAHD (300) View species results
Alkaloid pathway 622 21 7DLGT (95) View species results
Phenylpropanoid pathway 490 11 POD (243) View species results
Flavonoid pathway 355 12 UFGT (201) View species results
Steroid pathway 206 13 SMT1/SMT2/SMT3 (85) View species results
Rosmarinic acid pathway 185 7 C4H (83) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2470 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 502 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status Best Target
OsatZS9710G0005170.2 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
OsatZS9710G0008540.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
OsatZS9710G0008830.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0008990.1 Alkaloid G8O/G8H medium pass G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0011140.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0034800.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
OsatZS9710G0034940.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0035010.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0035020.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0035040.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0035060.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9710G0035940.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
OsatZS9711G0027510.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
OsatZS9712G0008380.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU