PlantSME Plant secondary metabolism enzyme database

Pallavicinia ambigua (pallavicinia_ambigua)

Imported from atlas release summary for Pallavicinia ambigua.

762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.87% Terpenoid pathway 25.59% Alkaloid pathway 18.64% Flavonoid pathway 10.63% Rosmarinic acid pathway 10.63% Steroid pathway 5.64%
Family Distribution
C4H 8.04% C3'H/CYP98A 6.62% CYP76 5.62% BAHD 5.38% POD 4.33% 4CL 4.0% IFS 3.47% STR 3.19%
Other Families 59.35%
More Families (97)
NMT 59 2.81% T3O 54 2.57% DWF4/CYP90B1 54 2.57% BR6OX2/CYP85A2 50 2.38% F3'H/CYP75B 45 2.14% F3H 41 1.95% PAL 39 1.86% IO 37 1.76% H6H 31 1.48% HCT 30 1.43% CSE 30 1.43% GS 29 1.38% IFR 29 1.38% F3'5'H/CYP75A 27 1.29% RAS 27 1.29% COMT 25 1.19% PYKS 24 1.14% G8O/G8H 24 1.14% SMT1/SMT2/SMT3 23 1.09% LAMT 21 1.0% TPS 21 1.0% UFGT 20 0.95% CAD 20 0.95% UGT 20 0.95% TRI/TRII 19 0.9% 7DLGT 19 0.9% CODM/T6ODM 19 0.9% CHS 19 0.9% T16H 18 0.86% COR 15 0.71% CAS 15 0.71% BR6OX1/CYP85A1 15 0.71% CYP71 15 0.71% CYP90D1 13 0.62% 7DLH 11 0.52% F5H/CYP84A 11 0.52% TAT 11 0.52% AACT 11 0.52% SLS 10 0.48% CYP719 10 0.48% FNS 10 0.48% DFR 10 0.48% CPR 10 0.48% CNMT 9 0.43% PMT 9 0.43% LAC 9 0.43% ROT3/CYP90C1 9 0.43% GES 8 0.38% CYP80B1 8 0.38% CYP51G1 8 0.38% 8HGO 7 0.33% NCS 6 0.29% CCR 6 0.29% CPD/CYP90A1 6 0.29% HMGR 6 0.29% 16OMT 5 0.24% SGD 5 0.24% FLS 5 0.24% DET2 5 0.24% PMK 5 0.24% DXS 5 0.24% ADC 4 0.19% ANR 4 0.19% ANS/LDOX 4 0.19% HPPR 4 0.19% FK 4 0.19% SQS/FDFT1 4 0.19% FPPS 4 0.19% GGPPS 4 0.19% TYDC_DDC 3 0.14% CHI 3 0.14% CCoAOMT 3 0.14% SMO1/SMO2 3 0.14% MVD 3 0.14% CMK/IspE 3 0.14% CYP80F1 2 0.1% MPO 2 0.1% BBE 2 0.1% 6OMT_4OMT_SOMT 2 0.1% TDC 2 0.1% DWF7 2 0.1% SQE 2 0.1% DWF1 2 0.1% DWF5 2 0.1% IDI 2 0.1% MVK 2 0.1% MCT/IspD 2 0.1% DXR 2 0.1% ISY 1 0.05% ODC 1 0.05% XMT_MXMT_DXMT 1 0.05% HYD1 1 0.05% CPI1 1 0.05% HMGS 1 0.05% HDR/IspH 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 220 13 POD (85) View species results
Terpenoid pathway 195 20 BAHD (69) View species results
Alkaloid pathway 142 21 STR (23) View species results
Flavonoid pathway 81 11 CHS (18) View species results
Rosmarinic acid pathway 81 7 C4H (33) View species results
Steroid pathway 43 13 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 170 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
Reset
Gene Pathway Family Confidence Status Best Target
Pambctg000320_pilon_pilon_pilon0000550 Terpenoid BAHD low borderline BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Pambctg000510_pilon_pilon_pilon0002190 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
Pambctg000540_pilon_pilon_pilon0003040 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg000600_pilon_pilon_pilon0004540 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Pambctg000660_pilon_pilon_pilon0005150 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Pambctg001140_pilon_pilon_pilon0014110 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Pambctg001190_pilon_pilon_pilon0016270 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
Pambctg001190_pilon_pilon_pilon0017180 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Pambctg001350_pilon_pilon_pilon0020950 Terpenoid BAHD medium pass BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
Pambctg001530_pilon_pilon_pilon0024460 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Pambctg001560_pilon_pilon_pilon0025660 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Pambctg001900_pilon_pilon_pilon0031000 Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
Pambctg001960_pilon_pilon_pilon0032590 Terpenoid BAHD medium pass BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
Pambctg001960_pilon_pilon_pilon0032610 Terpenoid BAHD medium pass BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
Pambctg001960_pilon_pilon_pilon0032620 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg002050_pilon_pilon_pilon0033710 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
Pambctg002050_pilon_pilon_pilon0033720 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Pambctg002110_pilon_pilon_pilon0036070 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
Pambctg002120_pilon_pilon_pilon0036450 Terpenoid BAHD medium pass BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
Pambctg002300_pilon_pilon_pilon0038040 Terpenoid BAHD low borderline BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
Pambctg002320_pilon_pilon_pilon0039590 Terpenoid BAHD low borderline BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Pambctg002320_pilon_pilon_pilon0039880 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg002320_pilon_pilon_pilon0040050 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg002320_pilon_pilon_pilon0040190 Terpenoid BAHD low borderline BAHD__00042__sp_Q500Z2_ZDH20_ARATH
Pambctg002970_pilon_pilon_pilon0043020 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg002970_pilon_pilon_pilon0043070 Terpenoid BAHD low borderline BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Pambctg002970_pilon_pilon_pilon0043210 Terpenoid BAHD low borderline BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
Pambctg003090_pilon_pilon_pilon0044760 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Pambctg003150_pilon_pilon_pilon0045820 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
Pambctg003580_pilon_pilon_pilon0055820 Terpenoid BAHD medium pass BAHD__00014__sp_B9RK42_GPC1_RICCO
Pambctg003690_pilon_pilon_pilon0057260 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Pambctg003920_pilon_pilon_pilon0061600 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Pambctg004360_pilon_pilon_pilon0067460 Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Pambctg005030_pilon_pilon_pilon0074650 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg005300_pilon_pilon_pilon0076250 Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
Pambctg005300_pilon_pilon_pilon0076360 Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
Pambctg005410_pilon_pilon_pilon0077870 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Pambctg005720_pilon_pilon_pilon0080340 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Pambctg005780_pilon_pilon_pilon0081190 Terpenoid BAHD low borderline BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Pambctg005980_pilon_pilon_pilon0083160 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
Pambctg006140_pilon_pilon_pilon0085930 Terpenoid BAHD low borderline BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Pambctg006140_pilon_pilon_pilon0085940 Terpenoid BAHD low borderline BAHD__00089__sp_Q9SB58_ZDH19_ARATH
Pambctg006450_pilon_pilon_pilon0091550 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Pambctg006530_pilon_pilon_pilon0092740 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg006660_pilon_pilon_pilon0097880 Terpenoid BAHD low borderline BAHD__00030__sp_O80816_GLC_ARATH
Pambctg006710_pilon_pilon_pilon0098760 Terpenoid BAHD medium pass BAHD__00046__sp_Q5GKZ7_DAT1A_SOYBN
Pambctg006970_pilon_pilon_pilon0101050 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Pambctg007070_pilon_pilon_pilon0101800 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Pambctg007230_pilon_pilon_pilon0104290 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Pambctg007390_pilon_pilon_pilon0106200 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH