PlantSME Plant secondary metabolism enzyme database

Pallavicinia ambigua (pallavicinia_ambigua)

Imported from atlas release summary for Pallavicinia ambigua.

762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.87% Terpenoid pathway 25.59% Alkaloid pathway 18.64% Flavonoid pathway 10.63% Rosmarinic acid pathway 10.63% Steroid pathway 5.64%
Family Distribution
C4H 8.04% C3'H/CYP98A 6.62% CYP76 5.62% BAHD 5.38% POD 4.33% 4CL 4.0% IFS 3.47% STR 3.19%
Other Families 59.35%
More Families (97)
NMT 59 2.81% T3O 54 2.57% DWF4/CYP90B1 54 2.57% BR6OX2/CYP85A2 50 2.38% F3'H/CYP75B 45 2.14% F3H 41 1.95% PAL 39 1.86% IO 37 1.76% H6H 31 1.48% HCT 30 1.43% CSE 30 1.43% GS 29 1.38% IFR 29 1.38% F3'5'H/CYP75A 27 1.29% RAS 27 1.29% COMT 25 1.19% PYKS 24 1.14% G8O/G8H 24 1.14% SMT1/SMT2/SMT3 23 1.09% LAMT 21 1.0% TPS 21 1.0% UFGT 20 0.95% CAD 20 0.95% UGT 20 0.95% TRI/TRII 19 0.9% 7DLGT 19 0.9% CODM/T6ODM 19 0.9% CHS 19 0.9% T16H 18 0.86% COR 15 0.71% CAS 15 0.71% BR6OX1/CYP85A1 15 0.71% CYP71 15 0.71% CYP90D1 13 0.62% 7DLH 11 0.52% F5H/CYP84A 11 0.52% TAT 11 0.52% AACT 11 0.52% SLS 10 0.48% CYP719 10 0.48% FNS 10 0.48% DFR 10 0.48% CPR 10 0.48% CNMT 9 0.43% PMT 9 0.43% LAC 9 0.43% ROT3/CYP90C1 9 0.43% GES 8 0.38% CYP80B1 8 0.38% CYP51G1 8 0.38% 8HGO 7 0.33% NCS 6 0.29% CCR 6 0.29% CPD/CYP90A1 6 0.29% HMGR 6 0.29% 16OMT 5 0.24% SGD 5 0.24% FLS 5 0.24% DET2 5 0.24% PMK 5 0.24% DXS 5 0.24% ADC 4 0.19% ANR 4 0.19% ANS/LDOX 4 0.19% HPPR 4 0.19% FK 4 0.19% SQS/FDFT1 4 0.19% FPPS 4 0.19% GGPPS 4 0.19% TYDC_DDC 3 0.14% CHI 3 0.14% CCoAOMT 3 0.14% SMO1/SMO2 3 0.14% MVD 3 0.14% CMK/IspE 3 0.14% CYP80F1 2 0.1% MPO 2 0.1% BBE 2 0.1% 6OMT_4OMT_SOMT 2 0.1% TDC 2 0.1% DWF7 2 0.1% SQE 2 0.1% DWF1 2 0.1% DWF5 2 0.1% IDI 2 0.1% MVK 2 0.1% MCT/IspD 2 0.1% DXR 2 0.1% ISY 1 0.05% ODC 1 0.05% XMT_MXMT_DXMT 1 0.05% HYD1 1 0.05% CPI1 1 0.05% HMGS 1 0.05% HDR/IspH 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 220 13 POD (85) View species results
Terpenoid pathway 195 20 BAHD (69) View species results
Alkaloid pathway 142 21 STR (23) View species results
Flavonoid pathway 81 11 CHS (18) View species results
Rosmarinic acid pathway 81 7 C4H (33) View species results
Steroid pathway 43 13 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 170 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
Pambctg000680_pilon_pilon_pilon0006740 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg000680_pilon_pilon_pilon0006750 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg001410_pilon_pilon_pilon0022670 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg001410_pilon_pilon_pilon0023510 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg003560_pilon_pilon_pilon0055130 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg005940_pilon_pilon_pilon0082870 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Pambctg006090_pilon_pilon_pilon0085570 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
Pambctg007510_pilon_pilon_pilon0111750 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
Pambctg009250_pilon_pilon_pilon0135150 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg009780_pilon_pilon_pilon0151750 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
Pambctg013300_pilon_pilon_pilon0203770 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg013440_pilon_pilon_pilon0207780 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg013580_pilon_pilon_pilon0212860 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg014370_pilon_pilon_pilon0229340 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Pambctg015180_pilon_pilon_pilon0240740 Alkaloid COR low borderline COR__00003__sp_Q9SQ68_COR13_PAPSO