PlantSME Plant secondary metabolism enzyme database

Pallavicinia ambigua (pallavicinia_ambigua)

Imported from atlas release summary for Pallavicinia ambigua.

762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.87% Terpenoid pathway 25.59% Alkaloid pathway 18.64% Flavonoid pathway 10.63% Rosmarinic acid pathway 10.63% Steroid pathway 5.64%
Family Distribution
C4H 8.04% C3'H/CYP98A 6.62% CYP76 5.62% BAHD 5.38% POD 4.33% 4CL 4.0% IFS 3.47% STR 3.19%
Other Families 59.35%
More Families (97)
NMT 59 2.81% T3O 54 2.57% DWF4/CYP90B1 54 2.57% BR6OX2/CYP85A2 50 2.38% F3'H/CYP75B 45 2.14% F3H 41 1.95% PAL 39 1.86% IO 37 1.76% H6H 31 1.48% HCT 30 1.43% CSE 30 1.43% GS 29 1.38% IFR 29 1.38% F3'5'H/CYP75A 27 1.29% RAS 27 1.29% COMT 25 1.19% PYKS 24 1.14% G8O/G8H 24 1.14% SMT1/SMT2/SMT3 23 1.09% LAMT 21 1.0% TPS 21 1.0% UFGT 20 0.95% CAD 20 0.95% UGT 20 0.95% TRI/TRII 19 0.9% 7DLGT 19 0.9% CODM/T6ODM 19 0.9% CHS 19 0.9% T16H 18 0.86% COR 15 0.71% CAS 15 0.71% BR6OX1/CYP85A1 15 0.71% CYP71 15 0.71% CYP90D1 13 0.62% 7DLH 11 0.52% F5H/CYP84A 11 0.52% TAT 11 0.52% AACT 11 0.52% SLS 10 0.48% CYP719 10 0.48% FNS 10 0.48% DFR 10 0.48% CPR 10 0.48% CNMT 9 0.43% PMT 9 0.43% LAC 9 0.43% ROT3/CYP90C1 9 0.43% GES 8 0.38% CYP80B1 8 0.38% CYP51G1 8 0.38% 8HGO 7 0.33% NCS 6 0.29% CCR 6 0.29% CPD/CYP90A1 6 0.29% HMGR 6 0.29% 16OMT 5 0.24% SGD 5 0.24% FLS 5 0.24% DET2 5 0.24% PMK 5 0.24% DXS 5 0.24% ADC 4 0.19% ANR 4 0.19% ANS/LDOX 4 0.19% HPPR 4 0.19% FK 4 0.19% SQS/FDFT1 4 0.19% FPPS 4 0.19% GGPPS 4 0.19% TYDC_DDC 3 0.14% CHI 3 0.14% CCoAOMT 3 0.14% SMO1/SMO2 3 0.14% MVD 3 0.14% CMK/IspE 3 0.14% CYP80F1 2 0.1% MPO 2 0.1% BBE 2 0.1% 6OMT_4OMT_SOMT 2 0.1% TDC 2 0.1% DWF7 2 0.1% SQE 2 0.1% DWF1 2 0.1% DWF5 2 0.1% IDI 2 0.1% MVK 2 0.1% MCT/IspD 2 0.1% DXR 2 0.1% ISY 1 0.05% ODC 1 0.05% XMT_MXMT_DXMT 1 0.05% HYD1 1 0.05% CPI1 1 0.05% HMGS 1 0.05% HDR/IspH 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 220 13 POD (85) View species results
Terpenoid pathway 195 20 BAHD (69) View species results
Alkaloid pathway 142 21 STR (23) View species results
Flavonoid pathway 81 11 CHS (18) View species results
Rosmarinic acid pathway 81 7 C4H (33) View species results
Steroid pathway 43 13 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 170 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
Pambctg000600_pilon_pilon_pilon0004420 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
Pambctg001130_pilon_pilon_pilon0013370 Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI
Pambctg001190_pilon_pilon_pilon0016560 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
Pambctg005750_pilon_pilon_pilon0080850 Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI
Pambctg006530_pilon_pilon_pilon0093250 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
Pambctg010580_pilon_pilon_pilon0159700 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Pambctg011030_pilon_pilon_pilon0166490 Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI
Pambctg011030_pilon_pilon_pilon0166500 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
Pambctg014340_pilon_pilon_pilon0228280 Rosmarinic Acid CPR low borderline CPR__00008__sp_Q9SB48_NCPR1_ARATH
Pambctg015180_pilon_pilon_pilon0242460 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH