Pallavicinia ambigua (pallavicinia_ambigua)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 28.87% Terpenoid pathway 25.59% Alkaloid pathway 18.64% Flavonoid pathway 10.63% Rosmarinic acid pathway 10.63% Steroid pathway 5.64%

Family Distribution

762 Candidate Genes

C4H 8.04% C3'H/CYP98A 6.62% CYP76 5.62% BAHD 5.38% POD 4.33% 4CL 4.0% IFS 3.47% STR 3.19%

Other Families 59.35%

More Families (97)

NMT 59 2.81% T3O 54 2.57% DWF4/CYP90B1 54 2.57% BR6OX2/CYP85A2 50 2.38% F3'H/CYP75B 45 2.14% F3H 41 1.95% PAL 39 1.86% IO 37 1.76% H6H 31 1.48% HCT 30 1.43% CSE 30 1.43% GS 29 1.38% IFR 29 1.38% F3'5'H/CYP75A 27 1.29% RAS 27 1.29% COMT 25 1.19% PYKS 24 1.14% G8O/G8H 24 1.14% SMT1/SMT2/SMT3 23 1.09% LAMT 21 1.0% TPS 21 1.0% UFGT 20 0.95% CAD 20 0.95% UGT 20 0.95% TRI/TRII 19 0.9% 7DLGT 19 0.9% CODM/T6ODM 19 0.9% CHS 19 0.9% T16H 18 0.86% COR 15 0.71% CAS 15 0.71% BR6OX1/CYP85A1 15 0.71% CYP71 15 0.71% CYP90D1 13 0.62% 7DLH 11 0.52% F5H/CYP84A 11 0.52% TAT 11 0.52% AACT 11 0.52% SLS 10 0.48% CYP719 10 0.48% FNS 10 0.48% DFR 10 0.48% CPR 10 0.48% CNMT 9 0.43% PMT 9 0.43% LAC 9 0.43% ROT3/CYP90C1 9 0.43% GES 8 0.38% CYP80B1 8 0.38% CYP51G1 8 0.38% 8HGO 7 0.33% NCS 6 0.29% CCR 6 0.29% CPD/CYP90A1 6 0.29% HMGR 6 0.29% 16OMT 5 0.24% SGD 5 0.24% FLS 5 0.24% DET2 5 0.24% PMK 5 0.24% DXS 5 0.24% ADC 4 0.19% ANR 4 0.19% ANS/LDOX 4 0.19% HPPR 4 0.19% FK 4 0.19% SQS/FDFT1 4 0.19% FPPS 4 0.19% GGPPS 4 0.19% TYDC_DDC 3 0.14% CHI 3 0.14% CCoAOMT 3 0.14% SMO1/SMO2 3 0.14% MVD 3 0.14% CMK/IspE 3 0.14% CYP80F1 2 0.1% MPO 2 0.1% BBE 2 0.1% 6OMT_4OMT_SOMT 2 0.1% TDC 2 0.1% DWF7 2 0.1% SQE 2 0.1% DWF1 2 0.1% DWF5 2 0.1% IDI 2 0.1% MVK 2 0.1% MCT/IspD 2 0.1% DXR 2 0.1% ISY 1 0.05% ODC 1 0.05% XMT_MXMT_DXMT 1 0.05% HYD1 1 0.05% CPI1 1 0.05% HMGS 1 0.05% HDR/IspH 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	220	13	POD (85)	View species results
Terpenoid pathway	195	20	BAHD (69)	View species results
Alkaloid pathway	142	21	STR (23)	View species results
Flavonoid pathway	81	11	CHS (18)	View species results
Rosmarinic acid pathway	81	7	C4H (33)	View species results
Steroid pathway	43	13	CAS (14)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	926	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	170	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CAD

Gene	Pathway	Family	Confidence	Status	Best Target
Pambctg000680_pilon_pilon_pilon0006940	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pambctg002050_pilon_pilon_pilon0033870	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Pambctg003330_pilon_pilon_pilon0048490	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pambctg003760_pilon_pilon_pilon0058150	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pambctg003990_pilon_pilon_pilon0062760	Phenylpropanoid	CAD	low	borderline	CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Pambctg005610_pilon_pilon_pilon0078810	Phenylpropanoid	CAD	low	borderline	CAD__00008__sp_O49482_CADH5_ARATH
Pambctg008710_pilon_pilon_pilon0118870	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pambctg008730_pilon_pilon_pilon0118900	Phenylpropanoid	CAD	medium	pass	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Pambctg009150_pilon_pilon_pilon0129780	Phenylpropanoid	CAD	low	borderline	CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
Pambctg009150_pilon_pilon_pilon0130110	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Pambctg009780_pilon_pilon_pilon0152060	Phenylpropanoid	CAD	medium	pass	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Pambctg010530_pilon_pilon_pilon0157980	Phenylpropanoid	CAD	medium	pass	CAD__00012__sp_Q02972_CADH8_ARATH
Pambctg011440_pilon_pilon_pilon0173700	Phenylpropanoid	CAD	medium	pass	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Pambctg012780_pilon_pilon_pilon0193090	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pambctg013260_pilon_pilon_pilon0203220	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Pambctg013260_pilon_pilon_pilon0203370	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Pambctg013260_pilon_pilon_pilon0203380	Phenylpropanoid	CAD	medium	pass	CAD__00009__sp_P42734_CADH9_ARATH
Pambctg015180_pilon_pilon_pilon0240230	Phenylpropanoid	CAD	low	borderline	CAD__00012__sp_Q02972_CADH8_ARATH
Pambctg015510_pilon_pilon_pilon0248520	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pambctg016010_pilon_pilon_pilon0265180	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE