PlantSME Plant secondary metabolism enzyme database

Pallavicinia ambigua (pallavicinia_ambigua)

Imported from atlas release summary for Pallavicinia ambigua.

762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.87% Terpenoid pathway 25.59% Alkaloid pathway 18.64% Flavonoid pathway 10.63% Rosmarinic acid pathway 10.63% Steroid pathway 5.64%
Family Distribution
C4H 8.04% C3'H/CYP98A 6.62% CYP76 5.62% BAHD 5.38% POD 4.33% 4CL 4.0% IFS 3.47% STR 3.19%
Other Families 59.35%
More Families (97)
NMT 59 2.81% T3O 54 2.57% DWF4/CYP90B1 54 2.57% BR6OX2/CYP85A2 50 2.38% F3'H/CYP75B 45 2.14% F3H 41 1.95% PAL 39 1.86% IO 37 1.76% H6H 31 1.48% HCT 30 1.43% CSE 30 1.43% GS 29 1.38% IFR 29 1.38% F3'5'H/CYP75A 27 1.29% RAS 27 1.29% COMT 25 1.19% PYKS 24 1.14% G8O/G8H 24 1.14% SMT1/SMT2/SMT3 23 1.09% LAMT 21 1.0% TPS 21 1.0% UFGT 20 0.95% CAD 20 0.95% UGT 20 0.95% TRI/TRII 19 0.9% 7DLGT 19 0.9% CODM/T6ODM 19 0.9% CHS 19 0.9% T16H 18 0.86% COR 15 0.71% CAS 15 0.71% BR6OX1/CYP85A1 15 0.71% CYP71 15 0.71% CYP90D1 13 0.62% 7DLH 11 0.52% F5H/CYP84A 11 0.52% TAT 11 0.52% AACT 11 0.52% SLS 10 0.48% CYP719 10 0.48% FNS 10 0.48% DFR 10 0.48% CPR 10 0.48% CNMT 9 0.43% PMT 9 0.43% LAC 9 0.43% ROT3/CYP90C1 9 0.43% GES 8 0.38% CYP80B1 8 0.38% CYP51G1 8 0.38% 8HGO 7 0.33% NCS 6 0.29% CCR 6 0.29% CPD/CYP90A1 6 0.29% HMGR 6 0.29% 16OMT 5 0.24% SGD 5 0.24% FLS 5 0.24% DET2 5 0.24% PMK 5 0.24% DXS 5 0.24% ADC 4 0.19% ANR 4 0.19% ANS/LDOX 4 0.19% HPPR 4 0.19% FK 4 0.19% SQS/FDFT1 4 0.19% FPPS 4 0.19% GGPPS 4 0.19% TYDC_DDC 3 0.14% CHI 3 0.14% CCoAOMT 3 0.14% SMO1/SMO2 3 0.14% MVD 3 0.14% CMK/IspE 3 0.14% CYP80F1 2 0.1% MPO 2 0.1% BBE 2 0.1% 6OMT_4OMT_SOMT 2 0.1% TDC 2 0.1% DWF7 2 0.1% SQE 2 0.1% DWF1 2 0.1% DWF5 2 0.1% IDI 2 0.1% MVK 2 0.1% MCT/IspD 2 0.1% DXR 2 0.1% ISY 1 0.05% ODC 1 0.05% XMT_MXMT_DXMT 1 0.05% HYD1 1 0.05% CPI1 1 0.05% HMGS 1 0.05% HDR/IspH 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 220 13 POD (85) View species results
Terpenoid pathway 195 20 BAHD (69) View species results
Alkaloid pathway 142 21 STR (23) View species results
Flavonoid pathway 81 11 CHS (18) View species results
Rosmarinic acid pathway 81 7 C4H (33) View species results
Steroid pathway 43 13 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 170 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
Reset
Gene Pathway Family Confidence Status Best Target
Pambctg015340_pilon_pilon_pilon0245290 Terpenoid BAHD low borderline BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Pambctg015340_pilon_pilon_pilon0245300 Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Pambctg015390_pilon_pilon_pilon0246330 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Pambctg015390_pilon_pilon_pilon0246340 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Pambctg015400_pilon_pilon_pilon0246350 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Pambctg015540_pilon_pilon_pilon0250540 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
Pambctg015700_pilon_pilon_pilon0254240 Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Pambctg015990_pilon_pilon_pilon0262880 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
Pambctg016010_pilon_pilon_pilon0265220 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Pambctg016010_pilon_pilon_pilon0265750 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Pambctg016040_pilon_pilon_pilon0269430 Terpenoid BAHD medium pass BAHD__00079__sp_Q9LIE4_ZDHC8_ARATH
Pambctg016040_pilon_pilon_pilon0270000 Terpenoid BAHD low borderline BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Pambctg016040_pilon_pilon_pilon0270020 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH