Pallavicinia ambigua (pallavicinia_ambigua)
Imported from atlas release summary for Pallavicinia ambigua.
762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
762
Candidate Genes
C4H
8.04%
C3'H/CYP98A
6.62%
CYP76
5.62%
BAHD
5.38%
POD
4.33%
4CL
4.0%
IFS
3.47%
STR
3.19%
Other Families
59.35%
More Families (97)
NMT
59
2.81%
T3O
54
2.57%
DWF4/CYP90B1
54
2.57%
BR6OX2/CYP85A2
50
2.38%
F3'H/CYP75B
45
2.14%
F3H
41
1.95%
PAL
39
1.86%
IO
37
1.76%
H6H
31
1.48%
HCT
30
1.43%
CSE
30
1.43%
GS
29
1.38%
IFR
29
1.38%
F3'5'H/CYP75A
27
1.29%
RAS
27
1.29%
COMT
25
1.19%
PYKS
24
1.14%
G8O/G8H
24
1.14%
SMT1/SMT2/SMT3
23
1.09%
LAMT
21
1.0%
TPS
21
1.0%
UFGT
20
0.95%
CAD
20
0.95%
UGT
20
0.95%
TRI/TRII
19
0.9%
7DLGT
19
0.9%
CODM/T6ODM
19
0.9%
CHS
19
0.9%
T16H
18
0.86%
COR
15
0.71%
CAS
15
0.71%
BR6OX1/CYP85A1
15
0.71%
CYP71
15
0.71%
CYP90D1
13
0.62%
7DLH
11
0.52%
F5H/CYP84A
11
0.52%
TAT
11
0.52%
AACT
11
0.52%
SLS
10
0.48%
CYP719
10
0.48%
FNS
10
0.48%
DFR
10
0.48%
CPR
10
0.48%
CNMT
9
0.43%
PMT
9
0.43%
LAC
9
0.43%
ROT3/CYP90C1
9
0.43%
GES
8
0.38%
CYP80B1
8
0.38%
CYP51G1
8
0.38%
8HGO
7
0.33%
NCS
6
0.29%
CCR
6
0.29%
CPD/CYP90A1
6
0.29%
HMGR
6
0.29%
16OMT
5
0.24%
SGD
5
0.24%
FLS
5
0.24%
DET2
5
0.24%
PMK
5
0.24%
DXS
5
0.24%
ADC
4
0.19%
ANR
4
0.19%
ANS/LDOX
4
0.19%
HPPR
4
0.19%
FK
4
0.19%
SQS/FDFT1
4
0.19%
FPPS
4
0.19%
GGPPS
4
0.19%
TYDC_DDC
3
0.14%
CHI
3
0.14%
CCoAOMT
3
0.14%
SMO1/SMO2
3
0.14%
MVD
3
0.14%
CMK/IspE
3
0.14%
CYP80F1
2
0.1%
MPO
2
0.1%
BBE
2
0.1%
6OMT_4OMT_SOMT
2
0.1%
TDC
2
0.1%
DWF7
2
0.1%
SQE
2
0.1%
DWF1
2
0.1%
DWF5
2
0.1%
IDI
2
0.1%
MVK
2
0.1%
MCT/IspD
2
0.1%
DXR
2
0.1%
ISY
1
0.05%
ODC
1
0.05%
XMT_MXMT_DXMT
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
HMGS
1
0.05%
HDR/IspH
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 220 | 13 | POD (85) | View species results |
| Terpenoid pathway | 195 | 20 | BAHD (69) | View species results |
| Alkaloid pathway | 142 | 21 | STR (23) | View species results |
| Flavonoid pathway | 81 | 11 | CHS (18) | View species results |
| Rosmarinic acid pathway | 81 | 7 | C4H (33) | View species results |
| Steroid pathway | 43 | 13 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 926 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 170 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pambctg009320_pilon_pilon_pilon0141010 | Phenylpropanoid | POD | medium | pass | POD__00020__sp_Q9FE01_APX2_ORYSJ |
| Pambctg009400_pilon_pilon_pilon0142600 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Pambctg009440_pilon_pilon_pilon0144400 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pambctg009740_pilon_pilon_pilon0149290 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Pambctg009740_pilon_pilon_pilon0149320 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg009740_pilon_pilon_pilon0149370 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg009780_pilon_pilon_pilon0151870 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Pambctg010280_pilon_pilon_pilon0153050 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg010580_pilon_pilon_pilon0159750 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg010580_pilon_pilon_pilon0160430 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg011230_pilon_pilon_pilon0168310 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg011230_pilon_pilon_pilon0168370 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Pambctg011230_pilon_pilon_pilon0168400 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pambctg011280_pilon_pilon_pilon0170230 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Pambctg011390_pilon_pilon_pilon0172650 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pambctg011460_pilon_pilon_pilon0175670 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Pambctg011480_pilon_pilon_pilon0175830 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Pambctg012040_pilon_pilon_pilon0185440 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pambctg012160_pilon_pilon_pilon0188990 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Pambctg012160_pilon_pilon_pilon0189050 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Pambctg012410_pilon_pilon_pilon0191010 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pambctg012730_pilon_pilon_pilon0192460 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pambctg012730_pilon_pilon_pilon0192520 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Pambctg012850_pilon_pilon_pilon0194130 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pambctg013390_pilon_pilon_pilon0205600 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg013390_pilon_pilon_pilon0206300 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Pambctg013530_pilon_pilon_pilon0211530 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg013730_pilon_pilon_pilon0215230 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Pambctg014040_pilon_pilon_pilon0221840 | Phenylpropanoid | POD | medium | pass | POD__00008__sp_P52574_REHY_SYNRU |
| Pambctg014400_pilon_pilon_pilon0233200 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Pambctg015090_pilon_pilon_pilon0238250 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| Pambctg015180_pilon_pilon_pilon0242010 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| Pambctg015540_pilon_pilon_pilon0249290 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Pambctg015540_pilon_pilon_pilon0249930 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pambctg015750_pilon_pilon_pilon0256400 | Phenylpropanoid | POD | low | borderline | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| Pambctg015780_pilon_pilon_pilon0257870 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Pambctg015890_pilon_pilon_pilon0260460 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Pambctg016020_pilon_pilon_pilon0265790 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Pambctg016040_pilon_pilon_pilon0269840 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg016040_pilon_pilon_pilon0269850 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pambctg016040_pilon_pilon_pilon0269870 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |