Pallavicinia ambigua (pallavicinia_ambigua)
Imported from atlas release summary for Pallavicinia ambigua.
762
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
762
Candidate Genes
C4H
8.04%
C3'H/CYP98A
6.62%
CYP76
5.62%
BAHD
5.38%
POD
4.33%
4CL
4.0%
IFS
3.47%
STR
3.19%
Other Families
59.35%
More Families (97)
NMT
59
2.81%
T3O
54
2.57%
DWF4/CYP90B1
54
2.57%
BR6OX2/CYP85A2
50
2.38%
F3'H/CYP75B
45
2.14%
F3H
41
1.95%
PAL
39
1.86%
IO
37
1.76%
H6H
31
1.48%
HCT
30
1.43%
CSE
30
1.43%
GS
29
1.38%
IFR
29
1.38%
F3'5'H/CYP75A
27
1.29%
RAS
27
1.29%
COMT
25
1.19%
PYKS
24
1.14%
G8O/G8H
24
1.14%
SMT1/SMT2/SMT3
23
1.09%
LAMT
21
1.0%
TPS
21
1.0%
UFGT
20
0.95%
CAD
20
0.95%
UGT
20
0.95%
TRI/TRII
19
0.9%
7DLGT
19
0.9%
CODM/T6ODM
19
0.9%
CHS
19
0.9%
T16H
18
0.86%
COR
15
0.71%
CAS
15
0.71%
BR6OX1/CYP85A1
15
0.71%
CYP71
15
0.71%
CYP90D1
13
0.62%
7DLH
11
0.52%
F5H/CYP84A
11
0.52%
TAT
11
0.52%
AACT
11
0.52%
SLS
10
0.48%
CYP719
10
0.48%
FNS
10
0.48%
DFR
10
0.48%
CPR
10
0.48%
CNMT
9
0.43%
PMT
9
0.43%
LAC
9
0.43%
ROT3/CYP90C1
9
0.43%
GES
8
0.38%
CYP80B1
8
0.38%
CYP51G1
8
0.38%
8HGO
7
0.33%
NCS
6
0.29%
CCR
6
0.29%
CPD/CYP90A1
6
0.29%
HMGR
6
0.29%
16OMT
5
0.24%
SGD
5
0.24%
FLS
5
0.24%
DET2
5
0.24%
PMK
5
0.24%
DXS
5
0.24%
ADC
4
0.19%
ANR
4
0.19%
ANS/LDOX
4
0.19%
HPPR
4
0.19%
FK
4
0.19%
SQS/FDFT1
4
0.19%
FPPS
4
0.19%
GGPPS
4
0.19%
TYDC_DDC
3
0.14%
CHI
3
0.14%
CCoAOMT
3
0.14%
SMO1/SMO2
3
0.14%
MVD
3
0.14%
CMK/IspE
3
0.14%
CYP80F1
2
0.1%
MPO
2
0.1%
BBE
2
0.1%
6OMT_4OMT_SOMT
2
0.1%
TDC
2
0.1%
DWF7
2
0.1%
SQE
2
0.1%
DWF1
2
0.1%
DWF5
2
0.1%
IDI
2
0.1%
MVK
2
0.1%
MCT/IspD
2
0.1%
DXR
2
0.1%
ISY
1
0.05%
ODC
1
0.05%
XMT_MXMT_DXMT
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
HMGS
1
0.05%
HDR/IspH
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 220 | 13 | POD (85) | View species results |
| Terpenoid pathway | 195 | 20 | BAHD (69) | View species results |
| Alkaloid pathway | 142 | 21 | STR (23) | View species results |
| Flavonoid pathway | 81 | 11 | CHS (18) | View species results |
| Rosmarinic acid pathway | 81 | 7 | C4H (33) | View species results |
| Steroid pathway | 43 | 13 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 926 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 170 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pambctg013740_pilon_pilon_pilon0216020 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pambctg013780_pilon_pilon_pilon0218370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg014070_pilon_pilon_pilon0224970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg014090_pilon_pilon_pilon0225200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015180_pilon_pilon_pilon0242230 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015490_pilon_pilon_pilon0248340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015540_pilon_pilon_pilon0249350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015540_pilon_pilon_pilon0250420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015610_pilon_pilon_pilon0253710 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015640_pilon_pilon_pilon0253750 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015680_pilon_pilon_pilon0253910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015700_pilon_pilon_pilon0254560 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015720_pilon_pilon_pilon0254980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg015780_pilon_pilon_pilon0258160 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg016040_pilon_pilon_pilon0269670 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pambctg016040_pilon_pilon_pilon0270880 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pambctg016040_pilon_pilon_pilon0271000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |