Pallavicinia ambigua (pallavicinia_ambigua)
Imported from atlas release summary for Pallavicinia ambigua.
1036
Candidate Protein Records
762
Pathway-Level Records
2101
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2101
Family-Level Calls
C4H
8.04%
C3'H/CYP98A
6.62%
CYP76
5.62%
BAHD
5.38%
POD
4.33%
4CL
4.0%
IFS
3.47%
STR
3.19%
Other Families
59.35%
More Families (97)
NMT
59
2.81%
T3O
54
2.57%
DWF4/CYP90B1
54
2.57%
BR6OX2/CYP85A2
50
2.38%
F3'H/CYP75B
45
2.14%
F3H
41
1.95%
PAL
39
1.86%
IO
37
1.76%
H6H
31
1.48%
HCT
30
1.43%
CSE
30
1.43%
GS
29
1.38%
IFR
29
1.38%
F3'5'H/CYP75A
27
1.29%
RAS
27
1.29%
COMT
25
1.19%
PYKS
24
1.14%
G8O/G8H
24
1.14%
SMT1/SMT2/SMT3
23
1.09%
LAMT
21
1.0%
TPS
21
1.0%
UFGT
20
0.95%
CAD
20
0.95%
UGT
20
0.95%
TRI/TRII
19
0.9%
7DLGT
19
0.9%
CODM/T6ODM
19
0.9%
CHS
19
0.9%
T16H
18
0.86%
COR
15
0.71%
CAS
15
0.71%
BR6OX1/CYP85A1
15
0.71%
CYP71
15
0.71%
CYP90D1
13
0.62%
7DLH
11
0.52%
F5H/CYP84A
11
0.52%
TAT
11
0.52%
AACT
11
0.52%
SLS
10
0.48%
CYP719
10
0.48%
FNS
10
0.48%
DFR
10
0.48%
CPR
10
0.48%
CNMT
9
0.43%
PMT
9
0.43%
LAC
9
0.43%
ROT3/CYP90C1
9
0.43%
GES
8
0.38%
CYP80B1
8
0.38%
CYP51G1
8
0.38%
8HGO
7
0.33%
NCS
6
0.29%
CCR
6
0.29%
CPD/CYP90A1
6
0.29%
HMGR
6
0.29%
16OMT
5
0.24%
SGD
5
0.24%
FLS
5
0.24%
DET2
5
0.24%
PMK
5
0.24%
DXS
5
0.24%
ADC
4
0.19%
ANR
4
0.19%
ANS/LDOX
4
0.19%
HPPR
4
0.19%
FK
4
0.19%
SQS/FDFT1
4
0.19%
FPPS
4
0.19%
GGPPS
4
0.19%
TYDC_DDC
3
0.14%
CHI
3
0.14%
CCoAOMT
3
0.14%
SMO1/SMO2
3
0.14%
MVD
3
0.14%
CMK/IspE
3
0.14%
CYP80F1
2
0.1%
MPO
2
0.1%
BBE
2
0.1%
6OMT_4OMT_SOMT
2
0.1%
TDC
2
0.1%
DWF7
2
0.1%
SQE
2
0.1%
DWF1
2
0.1%
DWF5
2
0.1%
IDI
2
0.1%
MVK
2
0.1%
MCT/IspD
2
0.1%
DXR
2
0.1%
ISY
1
0.05%
ODC
1
0.05%
XMT_MXMT_DXMT
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
HMGS
1
0.05%
HDR/IspH
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 220 | 13 | POD (85) | View species results |
| Terpenoid pathway | 195 | 20 | BAHD (69) | View species results |
| Alkaloid pathway | 142 | 21 | STR (23) | View species results |
| Flavonoid pathway | 81 | 11 | CHS (18) | View species results |
| Rosmarinic acid pathway | 81 | 7 | C4H (33) | View species results |
| Steroid pathway | 43 | 13 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 926 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 170 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pambctg002970_pilon_pilon_pilon0043070 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg002970_pilon_pilon_pilon0043210 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg004360_pilon_pilon_pilon0067460 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg006140_pilon_pilon_pilon0085980 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg006530_pilon_pilon_pilon0092740 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg006660_pilon_pilon_pilon0097880 | Rosmarinic Acid | RAS | medium | pass |
| Pambctg006970_pilon_pilon_pilon0101050 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg007510_pilon_pilon_pilon0111760 | Rosmarinic Acid | RAS | medium | pass |
| Pambctg008650_pilon_pilon_pilon0118330 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg008840_pilon_pilon_pilon0121830 | Rosmarinic Acid | RAS | medium | pass |
| Pambctg009120_pilon_pilon_pilon0128820 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg009120_pilon_pilon_pilon0128840 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg009160_pilon_pilon_pilon0130360 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg010490_pilon_pilon_pilon0155400 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg011410_pilon_pilon_pilon0172970 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg011900_pilon_pilon_pilon0180860 | Rosmarinic Acid | RAS | medium | pass |
| Pambctg013220_pilon_pilon_pilon0201930 | Rosmarinic Acid | RAS | medium | pass |
| Pambctg014070_pilon_pilon_pilon0225090 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg014070_pilon_pilon_pilon0225160 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg015300_pilon_pilon_pilon0243990 | Rosmarinic Acid | RAS | medium | pass |
| Pambctg015700_pilon_pilon_pilon0254240 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg016040_pilon_pilon_pilon0270000 | Rosmarinic Acid | RAS | low | borderline |
| Pambctg002970_pilon_pilon_pilon0043030 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg006180_pilon_pilon_pilon0087300 | Rosmarinic Acid | TAT | medium | pass |
| Pambctg008440_pilon_pilon_pilon0115590 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg008740_pilon_pilon_pilon0119440 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg009050_pilon_pilon_pilon0125590 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg009270_pilon_pilon_pilon0138790 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg010730_pilon_pilon_pilon0162770 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg012030_pilon_pilon_pilon0184860 | Rosmarinic Acid | TAT | medium | pass |
| Pambctg012650_pilon_pilon_pilon0191520 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg013440_pilon_pilon_pilon0208160 | Rosmarinic Acid | TAT | low | borderline |
| Pambctg015490_pilon_pilon_pilon0248360 | Rosmarinic Acid | TAT | low | borderline |