Panax quinquefolius (panax_quinquefolius)
Imported from atlas release summary for Panax quinquefolius.
2322
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2322
Candidate Genes
C4H
6.18%
BAHD
6.15%
C3'H/CYP98A
5.57%
POD
4.31%
UGT
3.87%
4CL
3.7%
IFS
3.7%
7DLGT
3.46%
Other Families
63.08%
More Families (97)
CYP76
194
3.28%
UFGT
193
3.26%
T3O
175
2.95%
NMT
160
2.7%
F3H
148
2.5%
DWF4/CYP90B1
128
2.16%
F3'H/CYP75B
119
2.01%
STR
105
1.77%
BR6OX2/CYP85A2
103
1.74%
BBE
96
1.62%
CYP71
91
1.54%
CAD
90
1.52%
CODM/T6ODM
87
1.47%
CAS
84
1.42%
CSE
76
1.28%
SMT1/SMT2/SMT3
74
1.25%
CYP90D1
71
1.2%
HCT
66
1.11%
TRI/TRII
64
1.08%
H6H
59
1.0%
LAC
59
1.0%
T16H
58
0.98%
GS
54
0.91%
PAL
54
0.91%
TPS
54
0.91%
PYKS
52
0.88%
IFR
52
0.88%
RAS
50
0.84%
GES
49
0.83%
NCS
47
0.79%
SLS
46
0.78%
7DLH
45
0.76%
F5H/CYP84A
43
0.73%
TAT
43
0.73%
G8O/G8H
38
0.64%
COMT
38
0.64%
PMT
36
0.61%
FNS
35
0.59%
SQE
31
0.52%
IO
30
0.51%
ANR
28
0.47%
F3'5'H/CYP75A
27
0.46%
COR
26
0.44%
SGD
25
0.42%
CYP51G1
25
0.42%
16OMT
24
0.41%
8HGO
23
0.39%
CPR
21
0.35%
ROT3/CYP90C1
21
0.35%
CPD/CYP90A1
21
0.35%
LAMT
19
0.32%
CCR
19
0.32%
BR6OX1/CYP85A1
19
0.32%
CYP719
17
0.29%
DFR
17
0.29%
ANS/LDOX
17
0.29%
PMK
17
0.29%
MPO
15
0.25%
CYP80B1
15
0.25%
DET2
15
0.25%
HMGR
15
0.25%
GGPPS
15
0.25%
HPPR
13
0.22%
SQS/FDFT1
13
0.22%
CNMT
12
0.2%
DXS
12
0.2%
AACT
12
0.2%
FPPS
11
0.19%
CHS
10
0.17%
ISY
9
0.15%
XMT_MXMT_DXMT
8
0.14%
CCoAOMT
8
0.14%
MVD
7
0.12%
HMGS
7
0.12%
ADC
6
0.1%
TYDC_DDC
6
0.1%
CHI
6
0.1%
SMO1/SMO2
6
0.1%
MVK
6
0.1%
TDC
5
0.08%
FLS
4
0.07%
HYD1
4
0.07%
DXR
4
0.07%
CYP80F1
3
0.05%
DWF7
3
0.05%
HDS/IspG
3
0.05%
MDS/IspF
3
0.05%
HDR/IspH
3
0.05%
MCT/IspD
3
0.05%
DWF1
2
0.03%
DWF5
2
0.03%
FK
2
0.03%
6OMT_4OMT_SOMT
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
GPPS
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 718 | 20 | BAHD (277) | View species results |
| Phenylpropanoid pathway | 501 | 11 | POD (227) | View species results |
| Alkaloid pathway | 477 | 21 | NMT (91) | View species results |
| Flavonoid pathway | 258 | 11 | UFGT (162) | View species results |
| Rosmarinic acid pathway | 205 | 7 | C4H (65) | View species results |
| Steroid pathway | 163 | 11 | CAS (75) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2204 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 480 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| panax_quinquefolius_GWHPBEIR003836.1 | Flavonoid | DFR | low | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR006581.1 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR010531.1 | Flavonoid | DFR | medium | borderline | DFR__00003__sp_Q9XES5_DFRA_MALDO |
| panax_quinquefolius_GWHPBEIR016407.1 | Flavonoid | DFR | medium | borderline | DFR__00003__sp_Q9XES5_DFRA_MALDO |
| panax_quinquefolius_GWHPBEIR023338.1 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR025245.1 | Flavonoid | DFR | low | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR025799.1 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR035409.1 | Flavonoid | DFR | medium | borderline | DFR__00002__sp_Q84KP0_DFRA_PYRCO |
| panax_quinquefolius_GWHPBEIR037810.1 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR040881.1 | Flavonoid | DFR | medium | borderline | DFR__00002__sp_Q84KP0_DFRA_PYRCO |
| panax_quinquefolius_GWHPBEIR040883.1 | Flavonoid | DFR | medium | borderline | DFR__00003__sp_Q9XES5_DFRA_MALDO |
| panax_quinquefolius_GWHPBEIR045998.1 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR046362.1 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR050073.1 | Flavonoid | DFR | medium | borderline | DFR__00003__sp_Q9XES5_DFRA_MALDO |
| panax_quinquefolius_GWHPBEIR057790.1 | Flavonoid | DFR | medium | borderline | DFR__00003__sp_Q9XES5_DFRA_MALDO |
| panax_quinquefolius_GWHPBEIR061208.1 | Flavonoid | DFR | low | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| panax_quinquefolius_GWHPBEIR064169.1 | Flavonoid | DFR | medium | borderline | DFR__00003__sp_Q9XES5_DFRA_MALDO |