PlantSME Plant secondary metabolism enzyme database

Panax quinquefolius (panax_quinquefolius)

Imported from atlas release summary for Panax quinquefolius.

2322
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.92% Phenylpropanoid pathway 21.58% Alkaloid pathway 20.54% Flavonoid pathway 11.11% Rosmarinic acid pathway 8.83% Steroid pathway 7.02%
Family Distribution
C4H 6.18% BAHD 6.15% C3'H/CYP98A 5.57% POD 4.31% UGT 3.87% 4CL 3.7% IFS 3.7% 7DLGT 3.46%
Other Families 63.08%
More Families (97)
CYP76 194 3.28% UFGT 193 3.26% T3O 175 2.95% NMT 160 2.7% F3H 148 2.5% DWF4/CYP90B1 128 2.16% F3'H/CYP75B 119 2.01% STR 105 1.77% BR6OX2/CYP85A2 103 1.74% BBE 96 1.62% CYP71 91 1.54% CAD 90 1.52% CODM/T6ODM 87 1.47% CAS 84 1.42% CSE 76 1.28% SMT1/SMT2/SMT3 74 1.25% CYP90D1 71 1.2% HCT 66 1.11% TRI/TRII 64 1.08% H6H 59 1.0% LAC 59 1.0% T16H 58 0.98% GS 54 0.91% PAL 54 0.91% TPS 54 0.91% PYKS 52 0.88% IFR 52 0.88% RAS 50 0.84% GES 49 0.83% NCS 47 0.79% SLS 46 0.78% 7DLH 45 0.76% F5H/CYP84A 43 0.73% TAT 43 0.73% G8O/G8H 38 0.64% COMT 38 0.64% PMT 36 0.61% FNS 35 0.59% SQE 31 0.52% IO 30 0.51% ANR 28 0.47% F3'5'H/CYP75A 27 0.46% COR 26 0.44% SGD 25 0.42% CYP51G1 25 0.42% 16OMT 24 0.41% 8HGO 23 0.39% CPR 21 0.35% ROT3/CYP90C1 21 0.35% CPD/CYP90A1 21 0.35% LAMT 19 0.32% CCR 19 0.32% BR6OX1/CYP85A1 19 0.32% CYP719 17 0.29% DFR 17 0.29% ANS/LDOX 17 0.29% PMK 17 0.29% MPO 15 0.25% CYP80B1 15 0.25% DET2 15 0.25% HMGR 15 0.25% GGPPS 15 0.25% HPPR 13 0.22% SQS/FDFT1 13 0.22% CNMT 12 0.2% DXS 12 0.2% AACT 12 0.2% FPPS 11 0.19% CHS 10 0.17% ISY 9 0.15% XMT_MXMT_DXMT 8 0.14% CCoAOMT 8 0.14% MVD 7 0.12% HMGS 7 0.12% ADC 6 0.1% TYDC_DDC 6 0.1% CHI 6 0.1% SMO1/SMO2 6 0.1% MVK 6 0.1% TDC 5 0.08% FLS 4 0.07% HYD1 4 0.07% DXR 4 0.07% CYP80F1 3 0.05% DWF7 3 0.05% HDS/IspG 3 0.05% MDS/IspF 3 0.05% HDR/IspH 3 0.05% MCT/IspD 3 0.05% DWF1 2 0.03% DWF5 2 0.03% FK 2 0.03% 6OMT_4OMT_SOMT 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% GPPS 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 718 20 BAHD (277) View species results
Phenylpropanoid pathway 501 11 POD (227) View species results
Alkaloid pathway 477 21 NMT (91) View species results
Flavonoid pathway 258 11 UFGT (162) View species results
Rosmarinic acid pathway 205 7 C4H (65) View species results
Steroid pathway 163 11 CAS (75) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2204 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 480 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQS/FDFT1
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Gene Pathway Family Confidence Status
panax_quinquefolius_GWHPBEIR017580.1 Steroid SQS/FDFT1 medium pass
panax_quinquefolius_GWHPBEIR023460.1 Steroid SQS/FDFT1 low borderline
panax_quinquefolius_GWHPBEIR023746.1 Steroid SQS/FDFT1 high pass
panax_quinquefolius_GWHPBEIR037509.1 Steroid SQS/FDFT1 low borderline
panax_quinquefolius_GWHPBEIR037547.1 Steroid SQS/FDFT1 medium pass
panax_quinquefolius_GWHPBEIR038585.1 Steroid SQS/FDFT1 low borderline
panax_quinquefolius_GWHPBEIR042311.1 Steroid SQS/FDFT1 low borderline
panax_quinquefolius_GWHPBEIR042618.1 Steroid SQS/FDFT1 high pass
panax_quinquefolius_GWHPBEIR042859.1 Steroid SQS/FDFT1 high pass
panax_quinquefolius_GWHPBEIR047949.1 Steroid SQS/FDFT1 low borderline
panax_quinquefolius_GWHPBEIR051156.1 Steroid SQS/FDFT1 medium pass
panax_quinquefolius_GWHPBEIR058051.1 Steroid SQS/FDFT1 low borderline
panax_quinquefolius_GWHPBEIR058800.1 Steroid SQS/FDFT1 medium pass