Panicum hallii (panicum_hallii)
Imported from atlas release summary for Panicum hallii.
2136
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2136
Candidate Genes
C3'H/CYP98A
6.3%
BAHD
5.83%
C4H
5.75%
POD
4.42%
4CL
3.91%
UGT
3.85%
IFS
3.69%
7DLGT
3.65%
Other Families
62.6%
More Families (97)
UFGT
183
3.61%
T3O
179
3.53%
CYP76
163
3.22%
NMT
131
2.59%
DWF4/CYP90B1
122
2.41%
F3H
117
2.31%
F3'H/CYP75B
111
2.19%
BR6OX2/CYP85A2
100
1.97%
STR
93
1.84%
SMT1/SMT2/SMT3
84
1.66%
CYP71
84
1.66%
CAS
74
1.46%
CAD
71
1.4%
SLS
57
1.13%
LAC
57
1.13%
CODM/T6ODM
56
1.11%
TPS
56
1.11%
CCR
55
1.09%
GES
53
1.05%
TRI/TRII
52
1.03%
IFR
51
1.01%
HCT
51
1.01%
ANR
50
0.99%
H6H
48
0.95%
SGD
46
0.91%
PYKS
44
0.87%
G8O/G8H
43
0.85%
RAS
43
0.85%
COR
37
0.73%
16OMT
37
0.73%
NCS
37
0.73%
COMT
37
0.73%
CSE
36
0.71%
PMT
35
0.69%
GS
33
0.65%
CYP90D1
33
0.65%
T16H
30
0.59%
F3'5'H/CYP75A
30
0.59%
CYP51G1
29
0.57%
BR6OX1/CYP85A1
26
0.51%
PAL
24
0.47%
CPD/CYP90A1
24
0.47%
DFR
23
0.45%
8HGO
22
0.43%
FPPS
21
0.41%
FNS
20
0.39%
CNMT
19
0.38%
IO
19
0.38%
BBE
17
0.34%
CHS
17
0.34%
F5H/CYP84A
17
0.34%
DET2
14
0.28%
AACT
14
0.28%
SMO1/SMO2
13
0.26%
ANS/LDOX
12
0.24%
TAT
12
0.24%
GGPPS
12
0.24%
7DLH
11
0.22%
TYDC_DDC
10
0.2%
IDI
10
0.2%
CCoAOMT
9
0.18%
CPR
9
0.18%
ROT3/CYP90C1
9
0.18%
SQS/FDFT1
9
0.18%
MPO
8
0.16%
DWF1
8
0.16%
MVK
8
0.16%
MVD
8
0.16%
CYP80B1
7
0.14%
LAMT
7
0.14%
CYP719
6
0.12%
TDC
6
0.12%
ISY
6
0.12%
HPPR
6
0.12%
XMT_MXMT_DXMT
5
0.1%
HYD1
5
0.1%
CMK/IspE
5
0.1%
MCT/IspD
5
0.1%
CYP80F1
4
0.08%
ODC
4
0.08%
CHI
4
0.08%
MDS/IspF
3
0.06%
HMGR
3
0.06%
DXS
3
0.06%
HDR/IspH
3
0.06%
SQE
2
0.04%
HMGS
2
0.04%
DXR
2
0.04%
ADC
1
0.02%
FLS
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
HDS/IspG
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 570 | 20 | BAHD (217) | View species results |
| Alkaloid pathway | 494 | 21 | 7DLGT (88) | View species results |
| Phenylpropanoid pathway | 437 | 11 | POD (218) | View species results |
| Flavonoid pathway | 289 | 10 | UFGT (178) | View species results |
| Rosmarinic acid pathway | 195 | 7 | C4H (101) | View species results |
| Steroid pathway | 151 | 11 | SMT1/SMT2/SMT3 (55) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1901 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 389 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Phal05G0043790.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Phal05G0046000.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Phal06G0000410.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Phal06G0005270.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Phal06G0013530.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Phal06G0016420.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Phal06G0024880.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Phal06G0024980.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Phal07G0009660.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Phal07G0018430.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Phal07G0020150.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Phal07G0020150.2 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Phal07G0020150.3 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Phal07G0020150.4 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Phal07G0024380.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Phal07G0027880.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Phal08G0001730.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Phal08G0006640.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Phal08G0012090.2 | Alkaloid | NMT | medium | pass | NMT__00051__sp_Q96565_AMNMT_HORVV |
| Phal08G0012090.3 | Alkaloid | NMT | medium | pass | NMT__00051__sp_Q96565_AMNMT_HORVV |
| Phal09G0006340.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Phal09G0020640.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Phal09G0020640.2 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Phal09G0020640.3 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Phal09G0020640.4 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Phal09G0035390.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Phal09G0035390.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Phal09G0042470.1 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| Phal09G0042470.2 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| Phal09G0046760.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Phal09G0054570.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |