PlantSME Plant secondary metabolism enzyme database

Panicum hallii (panicum_hallii)

Imported from atlas release summary for Panicum hallii.

2136
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.69% Alkaloid pathway 23.13% Phenylpropanoid pathway 20.46% Flavonoid pathway 13.53% Rosmarinic acid pathway 9.13% Steroid pathway 7.07%
Family Distribution
C3'H/CYP98A 6.3% BAHD 5.83% C4H 5.75% POD 4.42% 4CL 3.91% UGT 3.85% IFS 3.69% 7DLGT 3.65%
Other Families 62.6%
More Families (97)
UFGT 183 3.61% T3O 179 3.53% CYP76 163 3.22% NMT 131 2.59% DWF4/CYP90B1 122 2.41% F3H 117 2.31% F3'H/CYP75B 111 2.19% BR6OX2/CYP85A2 100 1.97% STR 93 1.84% SMT1/SMT2/SMT3 84 1.66% CYP71 84 1.66% CAS 74 1.46% CAD 71 1.4% SLS 57 1.13% LAC 57 1.13% CODM/T6ODM 56 1.11% TPS 56 1.11% CCR 55 1.09% GES 53 1.05% TRI/TRII 52 1.03% IFR 51 1.01% HCT 51 1.01% ANR 50 0.99% H6H 48 0.95% SGD 46 0.91% PYKS 44 0.87% G8O/G8H 43 0.85% RAS 43 0.85% COR 37 0.73% 16OMT 37 0.73% NCS 37 0.73% COMT 37 0.73% CSE 36 0.71% PMT 35 0.69% GS 33 0.65% CYP90D1 33 0.65% T16H 30 0.59% F3'5'H/CYP75A 30 0.59% CYP51G1 29 0.57% BR6OX1/CYP85A1 26 0.51% PAL 24 0.47% CPD/CYP90A1 24 0.47% DFR 23 0.45% 8HGO 22 0.43% FPPS 21 0.41% FNS 20 0.39% CNMT 19 0.38% IO 19 0.38% BBE 17 0.34% CHS 17 0.34% F5H/CYP84A 17 0.34% DET2 14 0.28% AACT 14 0.28% SMO1/SMO2 13 0.26% ANS/LDOX 12 0.24% TAT 12 0.24% GGPPS 12 0.24% 7DLH 11 0.22% TYDC_DDC 10 0.2% IDI 10 0.2% CCoAOMT 9 0.18% CPR 9 0.18% ROT3/CYP90C1 9 0.18% SQS/FDFT1 9 0.18% MPO 8 0.16% DWF1 8 0.16% MVK 8 0.16% MVD 8 0.16% CYP80B1 7 0.14% LAMT 7 0.14% CYP719 6 0.12% TDC 6 0.12% ISY 6 0.12% HPPR 6 0.12% XMT_MXMT_DXMT 5 0.1% HYD1 5 0.1% CMK/IspE 5 0.1% MCT/IspD 5 0.1% CYP80F1 4 0.08% ODC 4 0.08% CHI 4 0.08% MDS/IspF 3 0.06% HMGR 3 0.06% DXS 3 0.06% HDR/IspH 3 0.06% SQE 2 0.04% HMGS 2 0.04% DXR 2 0.04% ADC 1 0.02% FLS 1 0.02% DWF5 1 0.02% FK 1 0.02% CPI1 1 0.02% DWF7 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 570 20 BAHD (217) View species results
Alkaloid pathway 494 21 7DLGT (88) View species results
Phenylpropanoid pathway 437 11 POD (218) View species results
Flavonoid pathway 289 10 UFGT (178) View species results
Rosmarinic acid pathway 195 7 C4H (101) View species results
Steroid pathway 151 11 SMT1/SMT2/SMT3 (55) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1901 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 389 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Phal03G0021150.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00004__sp_Q94EE9_TYDC_ORYSJ
Phal05G0013940.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00004__sp_Q94EE9_TYDC_ORYSJ
Phal06G0002730.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Phal08G0006860.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Phal08G0018720.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Phal08G0020120.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Phal08G0020130.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Phal09G0027000.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Phalscaffold_4380000940.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Phalscaffold_4380000970.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO