Panicum hallii (panicum_hallii)
Imported from atlas release summary for Panicum hallii.
2450
Candidate Protein Records
2136
Pathway-Level Records
5064
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5064
Family-Level Calls
C3'H/CYP98A
6.3%
BAHD
5.83%
C4H
5.75%
POD
4.42%
4CL
3.91%
UGT
3.85%
IFS
3.69%
7DLGT
3.65%
Other Families
62.6%
More Families (97)
UFGT
183
3.61%
T3O
179
3.53%
CYP76
163
3.22%
NMT
131
2.59%
DWF4/CYP90B1
122
2.41%
F3H
117
2.31%
F3'H/CYP75B
111
2.19%
BR6OX2/CYP85A2
100
1.97%
STR
93
1.84%
SMT1/SMT2/SMT3
84
1.66%
CYP71
84
1.66%
CAS
74
1.46%
CAD
71
1.4%
SLS
57
1.13%
LAC
57
1.13%
CODM/T6ODM
56
1.11%
TPS
56
1.11%
CCR
55
1.09%
GES
53
1.05%
TRI/TRII
52
1.03%
IFR
51
1.01%
HCT
51
1.01%
ANR
50
0.99%
H6H
48
0.95%
SGD
46
0.91%
PYKS
44
0.87%
G8O/G8H
43
0.85%
RAS
43
0.85%
COR
37
0.73%
16OMT
37
0.73%
NCS
37
0.73%
COMT
37
0.73%
CSE
36
0.71%
PMT
35
0.69%
GS
33
0.65%
CYP90D1
33
0.65%
T16H
30
0.59%
F3'5'H/CYP75A
30
0.59%
CYP51G1
29
0.57%
BR6OX1/CYP85A1
26
0.51%
PAL
24
0.47%
CPD/CYP90A1
24
0.47%
DFR
23
0.45%
8HGO
22
0.43%
FPPS
21
0.41%
FNS
20
0.39%
CNMT
19
0.38%
IO
19
0.38%
BBE
17
0.34%
CHS
17
0.34%
F5H/CYP84A
17
0.34%
DET2
14
0.28%
AACT
14
0.28%
SMO1/SMO2
13
0.26%
ANS/LDOX
12
0.24%
TAT
12
0.24%
GGPPS
12
0.24%
7DLH
11
0.22%
TYDC_DDC
10
0.2%
IDI
10
0.2%
CCoAOMT
9
0.18%
CPR
9
0.18%
ROT3/CYP90C1
9
0.18%
SQS/FDFT1
9
0.18%
MPO
8
0.16%
DWF1
8
0.16%
MVK
8
0.16%
MVD
8
0.16%
CYP80B1
7
0.14%
LAMT
7
0.14%
CYP719
6
0.12%
TDC
6
0.12%
ISY
6
0.12%
HPPR
6
0.12%
XMT_MXMT_DXMT
5
0.1%
HYD1
5
0.1%
CMK/IspE
5
0.1%
MCT/IspD
5
0.1%
CYP80F1
4
0.08%
ODC
4
0.08%
CHI
4
0.08%
MDS/IspF
3
0.06%
HMGR
3
0.06%
DXS
3
0.06%
HDR/IspH
3
0.06%
SQE
2
0.04%
HMGS
2
0.04%
DXR
2
0.04%
ADC
1
0.02%
FLS
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
HDS/IspG
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 570 | 20 | BAHD (217) | View species results |
| Alkaloid pathway | 494 | 21 | 7DLGT (88) | View species results |
| Phenylpropanoid pathway | 437 | 11 | POD (218) | View species results |
| Flavonoid pathway | 289 | 10 | UFGT (178) | View species results |
| Rosmarinic acid pathway | 195 | 7 | C4H (101) | View species results |
| Steroid pathway | 151 | 11 | SMT1/SMT2/SMT3 (55) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1901 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 389 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Phal06G0013690.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal06G0013710.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal06G0013710.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal07G0006540.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Phal07G0008480.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal07G0012130.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Phal07G0017690.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Phal07G0017700.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Phal07G0017700.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Phal07G0017730.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Phal07G0017740.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Phal07G0017750.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Phal07G0017760.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Phal08G0004160.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Phal08G0009160.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Phal08G0009160.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Phal08G0013700.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal08G0019100.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Phal08G0019120.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Phal08G0019130.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Phal08G0019140.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Phal08G0019150.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Phal08G0020280.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal08G0020900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Phal09G0002270.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal09G0003810.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal09G0003820.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Phal09G0014430.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Phal09G0022530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Phal09G0022550.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Phal09G0043150.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Phal09G0045110.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Phal09G0045110.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Phal03G0021150.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00004__sp_Q94EE9_TYDC_ORYSJ |
| Phal05G0013940.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00004__sp_Q94EE9_TYDC_ORYSJ |
| Phal06G0002730.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Phal08G0006860.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Phal08G0018720.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Phal08G0020120.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Phal08G0020130.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Phal09G0027000.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Phalscaffold_4380000940.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Phalscaffold_4380000970.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Phal03G0014340.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI |
| Phal04G0018160.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00008__sp_Q8H0D3_DXMT2_COFAR |
| Phal04G0020670.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Phal04G0020690.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Phal06G0006220.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI |