PlantSME Plant secondary metabolism enzyme database

Phaeoceros laevis (phaeoceros_laevis)

Imported from atlas release summary for Phaeoceros laevis.

447
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.95% Alkaloid pathway 24.38% Terpenoid pathway 24.38% Flavonoid pathway 9.17% Steroid pathway 8.28% Rosmarinic acid pathway 7.83%
Family Distribution
C4H 10.31% C3'H/CYP98A 7.1% CYP76 5.56% BAHD 4.82% POD 4.42% 4CL 3.61% IFS 3.41% NMT 3.01%
Other Families 57.76%
More Families (92)
T3O 45 3.01% DWF4/CYP90B1 45 3.01% G8O/G8H 44 2.95% F3'5'H/CYP75A 35 2.34% F3'H/CYP75B 35 2.34% STR 32 2.14% IFR 28 1.87% F3H 26 1.74% TRI/TRII 24 1.61% GS 23 1.54% BR6OX2/CYP85A2 23 1.54% SMT1/SMT2/SMT3 19 1.27% H6H 18 1.2% CODM/T6ODM 18 1.2% CAS 17 1.14% T16H 16 1.07% SLS 15 1.0% CYP71 15 1.0% PYKS 14 0.94% FNS 14 0.94% COMT 14 0.94% CAD 14 0.94% IO 13 0.87% ROT3/CYP90C1 13 0.87% TPS 13 0.87% RAS 11 0.74% F5H/CYP84A 10 0.67% LAC 10 0.67% CPD/CYP90A1 10 0.67% 16OMT 9 0.6% ANR 9 0.6% BR6OX1/CYP85A1 9 0.6% CNMT 8 0.54% PMT 8 0.54% CHS 8 0.54% ANS/LDOX 8 0.54% HCT 8 0.54% CSE 8 0.54% LAMT 7 0.47% GES 7 0.47% AACT 7 0.47% CYP80B1 6 0.4% 8HGO 6 0.4% PAL 6 0.4% GGPPS 6 0.4% TYDC_DDC 5 0.33% CYP719 5 0.33% ISY 5 0.33% NCS 5 0.33% CYP90D1 5 0.33% SQS/FDFT1 5 0.33% ADC 4 0.27% SGD 4 0.27% COR 4 0.27% CCR 4 0.27% CPR 4 0.27% TAT 4 0.27% SMO1/SMO2 4 0.27% DWF5 4 0.27% DXS 4 0.27% MVK 4 0.27% XMT_MXMT_DXMT 3 0.2% TDC 3 0.2% CCoAOMT 3 0.2% HYD1 3 0.2% DET2 3 0.2% CYP51G1 3 0.2% MCT/IspD 3 0.2% MVD 3 0.2% CMK/IspE 3 0.2% FPPS 3 0.2% CYP80F1 2 0.13% UFGT 2 0.13% CHI 2 0.13% DFR 2 0.13% DWF1 2 0.13% FK 2 0.13% SQE 2 0.13% UGT 2 0.13% MPO 1 0.07% 7DLH 1 0.07% 6OMT_4OMT_SOMT 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% HMGS 1 0.07% HDS/IspG 1 0.07% IDI 1 0.07% DXR 1 0.07% PMK 1 0.07% HDR/IspH 1 0.07% MDS/IspF 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 116 12 POD (61) View species results
Alkaloid pathway 109 17 T3O (28) View species results
Terpenoid pathway 109 18 BAHD (49) View species results
Flavonoid pathway 41 9 IFR (14) View species results
Steroid pathway 37 11 CAS (16) View species results
Rosmarinic acid pathway 35 7 C4H (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 744 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 91 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Plae2693230008590 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae2757600010420 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Plae3256560013900 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae3946290026550 Flavonoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Plae3987460037000 Flavonoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Plae3993910039660 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Plae4004490056330 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Plae4004800058090 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae4005090062720 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae4005660067970 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Plae4006330074620 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Plae4006380076710 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Plae4006770084010 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae4007100088360 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Plae4007270094820 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Plae4007670108130 Flavonoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Plae4007720108980 Flavonoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Plae4009700154820 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae2693230008590 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae2757600010420 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Plae3256560013900 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae3946290026550 Phenylpropanoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Plae3987460037000 Phenylpropanoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Plae3993910039660 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Plae4004490056330 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Plae4004800058090 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae4005090062720 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae4005660067970 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Plae4006330074620 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Plae4006380076710 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Plae4006770084010 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae4007100088360 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Plae4007270094820 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Plae4007670108130 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Plae4007720108980 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Plae4009700154820 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae2693230008590 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae2757600010420 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Plae3256560013900 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae3946290026550 Rosmarinic Acid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Plae3987460037000 Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Plae3993910039660 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Plae4004490056330 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Plae4004800058090 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae4005090062720 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Plae4005660067970 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Plae4006330074620 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Plae4006380076710 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Plae4006770084010 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Plae4007100088360 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC