PlantSME Plant secondary metabolism enzyme database

Phaeoceros laevis (phaeoceros_laevis)

Imported from atlas release summary for Phaeoceros laevis.

447
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.95% Alkaloid pathway 24.38% Terpenoid pathway 24.38% Flavonoid pathway 9.17% Steroid pathway 8.28% Rosmarinic acid pathway 7.83%
Family Distribution
C4H 10.31% C3'H/CYP98A 7.1% CYP76 5.56% BAHD 4.82% POD 4.42% 4CL 3.61% IFS 3.41% NMT 3.01%
Other Families 57.76%
More Families (92)
T3O 45 3.01% DWF4/CYP90B1 45 3.01% G8O/G8H 44 2.95% F3'5'H/CYP75A 35 2.34% F3'H/CYP75B 35 2.34% STR 32 2.14% IFR 28 1.87% F3H 26 1.74% TRI/TRII 24 1.61% GS 23 1.54% BR6OX2/CYP85A2 23 1.54% SMT1/SMT2/SMT3 19 1.27% H6H 18 1.2% CODM/T6ODM 18 1.2% CAS 17 1.14% T16H 16 1.07% SLS 15 1.0% CYP71 15 1.0% PYKS 14 0.94% FNS 14 0.94% COMT 14 0.94% CAD 14 0.94% IO 13 0.87% ROT3/CYP90C1 13 0.87% TPS 13 0.87% RAS 11 0.74% F5H/CYP84A 10 0.67% LAC 10 0.67% CPD/CYP90A1 10 0.67% 16OMT 9 0.6% ANR 9 0.6% BR6OX1/CYP85A1 9 0.6% CNMT 8 0.54% PMT 8 0.54% CHS 8 0.54% ANS/LDOX 8 0.54% HCT 8 0.54% CSE 8 0.54% LAMT 7 0.47% GES 7 0.47% AACT 7 0.47% CYP80B1 6 0.4% 8HGO 6 0.4% PAL 6 0.4% GGPPS 6 0.4% TYDC_DDC 5 0.33% CYP719 5 0.33% ISY 5 0.33% NCS 5 0.33% CYP90D1 5 0.33% SQS/FDFT1 5 0.33% ADC 4 0.27% SGD 4 0.27% COR 4 0.27% CCR 4 0.27% CPR 4 0.27% TAT 4 0.27% SMO1/SMO2 4 0.27% DWF5 4 0.27% DXS 4 0.27% MVK 4 0.27% XMT_MXMT_DXMT 3 0.2% TDC 3 0.2% CCoAOMT 3 0.2% HYD1 3 0.2% DET2 3 0.2% CYP51G1 3 0.2% MCT/IspD 3 0.2% MVD 3 0.2% CMK/IspE 3 0.2% FPPS 3 0.2% CYP80F1 2 0.13% UFGT 2 0.13% CHI 2 0.13% DFR 2 0.13% DWF1 2 0.13% FK 2 0.13% SQE 2 0.13% UGT 2 0.13% MPO 1 0.07% 7DLH 1 0.07% 6OMT_4OMT_SOMT 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% HMGS 1 0.07% HDS/IspG 1 0.07% IDI 1 0.07% DXR 1 0.07% PMK 1 0.07% HDR/IspH 1 0.07% MDS/IspF 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 116 12 POD (61) View species results
Alkaloid pathway 109 17 T3O (28) View species results
Terpenoid pathway 109 18 BAHD (49) View species results
Flavonoid pathway 41 9 IFR (14) View species results
Steroid pathway 37 11 CAS (16) View species results
Rosmarinic acid pathway 35 7 C4H (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 744 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 91 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F5H/CYP84A
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Gene Pathway Family Confidence Status Best Target
Plae2689590008430 Phenylpropanoid F5H/CYP84A medium pass F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae3984490035940 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4004810058290 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4006990086980 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4007330096310 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4007330096320 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4007760109630 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4007930116370 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4008610138260 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
Plae4008730142380 Phenylpropanoid F5H/CYP84A low borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH