PlantSME Plant secondary metabolism enzyme database

Phaeoceros laevis (phaeoceros_laevis)

Imported from atlas release summary for Phaeoceros laevis.

447
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.95% Alkaloid pathway 24.38% Terpenoid pathway 24.38% Flavonoid pathway 9.17% Steroid pathway 8.28% Rosmarinic acid pathway 7.83%
Family Distribution
C4H 10.31% C3'H/CYP98A 7.1% CYP76 5.56% BAHD 4.82% POD 4.42% 4CL 3.61% IFS 3.41% NMT 3.01%
Other Families 57.76%
More Families (92)
T3O 45 3.01% DWF4/CYP90B1 45 3.01% G8O/G8H 44 2.95% F3'5'H/CYP75A 35 2.34% F3'H/CYP75B 35 2.34% STR 32 2.14% IFR 28 1.87% F3H 26 1.74% TRI/TRII 24 1.61% GS 23 1.54% BR6OX2/CYP85A2 23 1.54% SMT1/SMT2/SMT3 19 1.27% H6H 18 1.2% CODM/T6ODM 18 1.2% CAS 17 1.14% T16H 16 1.07% SLS 15 1.0% CYP71 15 1.0% PYKS 14 0.94% FNS 14 0.94% COMT 14 0.94% CAD 14 0.94% IO 13 0.87% ROT3/CYP90C1 13 0.87% TPS 13 0.87% RAS 11 0.74% F5H/CYP84A 10 0.67% LAC 10 0.67% CPD/CYP90A1 10 0.67% 16OMT 9 0.6% ANR 9 0.6% BR6OX1/CYP85A1 9 0.6% CNMT 8 0.54% PMT 8 0.54% CHS 8 0.54% ANS/LDOX 8 0.54% HCT 8 0.54% CSE 8 0.54% LAMT 7 0.47% GES 7 0.47% AACT 7 0.47% CYP80B1 6 0.4% 8HGO 6 0.4% PAL 6 0.4% GGPPS 6 0.4% TYDC_DDC 5 0.33% CYP719 5 0.33% ISY 5 0.33% NCS 5 0.33% CYP90D1 5 0.33% SQS/FDFT1 5 0.33% ADC 4 0.27% SGD 4 0.27% COR 4 0.27% CCR 4 0.27% CPR 4 0.27% TAT 4 0.27% SMO1/SMO2 4 0.27% DWF5 4 0.27% DXS 4 0.27% MVK 4 0.27% XMT_MXMT_DXMT 3 0.2% TDC 3 0.2% CCoAOMT 3 0.2% HYD1 3 0.2% DET2 3 0.2% CYP51G1 3 0.2% MCT/IspD 3 0.2% MVD 3 0.2% CMK/IspE 3 0.2% FPPS 3 0.2% CYP80F1 2 0.13% UFGT 2 0.13% CHI 2 0.13% DFR 2 0.13% DWF1 2 0.13% FK 2 0.13% SQE 2 0.13% UGT 2 0.13% MPO 1 0.07% 7DLH 1 0.07% 6OMT_4OMT_SOMT 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% HMGS 1 0.07% HDS/IspG 1 0.07% IDI 1 0.07% DXR 1 0.07% PMK 1 0.07% HDR/IspH 1 0.07% MDS/IspF 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 116 12 POD (61) View species results
Alkaloid pathway 109 17 T3O (28) View species results
Terpenoid pathway 109 18 BAHD (49) View species results
Flavonoid pathway 41 9 IFR (14) View species results
Steroid pathway 37 11 CAS (16) View species results
Rosmarinic acid pathway 35 7 C4H (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 744 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 91 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
Plae4008530133700 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
Plae4008590134990 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Plae4008590135040 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Plae4008590136760 Terpenoid BAHD medium pass BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
Plae4008610137920 Terpenoid BAHD medium pass BAHD__00004__sp_A0A0M4FCN7_RAM2_PETHY
Plae4008730139740 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Plae4008730141340 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
Plae4008730142430 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Plae4008730142440 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Plae4008770144940 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Plae4009350150220 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Plae4009350150290 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Plae4009350150370 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Plae4009380150900 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Plae4009410151400 Terpenoid BAHD low borderline BAHD__00054__sp_Q8GYW8_SCT_ARATH
Plae4009410151440 Terpenoid BAHD low borderline BAHD__00095__sp_Q9SZ58_BRAT1_ARATH
Plae4009410151670 Terpenoid BAHD medium pass BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
Plae4009620152920 Terpenoid BAHD medium pass BAHD__00014__sp_B9RK42_GPC1_RICCO
Plae4009740156350 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Plae4010040160760 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Plae4010230162460 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Plae4010390165340 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH