PlantSME Plant secondary metabolism enzyme database

Plagiochasma appendiculatum (plagiochasma_appendiculatum)

Imported from atlas release summary for Plagiochasma appendiculatum.

633
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 30.65% Terpenoid pathway 23.06% Alkaloid pathway 19.91% Flavonoid pathway 10.9% Rosmarinic acid pathway 9.79% Steroid pathway 5.69%
Family Distribution
C4H 7.39% C3'H/CYP98A 7.12% POD 6.32% CYP76 4.89% IFS 4.84% BAHD 4.62% T3O 4.14% 4CL 3.51%
Other Families 57.17%
More Families (97)
DWF4/CYP90B1 66 3.51% NMT 57 3.03% F3H 43 2.28% STR 37 1.97% BR6OX2/CYP85A2 34 1.81% 7DLGT 32 1.7% F3'H/CYP75B 32 1.7% UGT 32 1.7% H6H 31 1.65% UFGT 28 1.49% CSE 28 1.49% CAD 24 1.28% IFR 22 1.17% GS 21 1.12% F3'5'H/CYP75A 21 1.12% PAL 21 1.12% TRI/TRII 19 1.01% RAS 19 1.01% CODM/T6ODM 18 0.96% PYKS 18 0.96% HCT 18 0.96% IO 17 0.9% TPS 17 0.9% COMT 16 0.85% CAS 16 0.85% T16H 15 0.8% SLS 14 0.74% SGD 14 0.74% CPD/CYP90A1 14 0.74% CYP71 14 0.74% G8O/G8H 13 0.69% LAMT 13 0.69% CHS 13 0.69% COR 12 0.64% ANR 12 0.64% BR6OX1/CYP85A1 12 0.64% SMT1/SMT2/SMT3 12 0.64% CYP90D1 11 0.58% ROT3/CYP90C1 11 0.58% CYP51G1 11 0.58% CYP80B1 8 0.43% CYP719 8 0.43% DFR 8 0.43% CCR 8 0.43% TAT 8 0.43% 16OMT 7 0.37% CNMT 7 0.37% FNS 7 0.37% F5H/CYP84A 7 0.37% NCS 6 0.32% 7DLH 6 0.32% GES 6 0.32% AACT 6 0.32% ANS/LDOX 5 0.27% CPR 5 0.27% SQS/FDFT1 5 0.27% FPPS 5 0.27% GGPPS 5 0.27% PMT 4 0.21% MPO 4 0.21% 8HGO 4 0.21% CHI 4 0.21% DXS 4 0.21% TDC 3 0.16% XMT_MXMT_DXMT 3 0.16% ISY 3 0.16% BBE 3 0.16% FLS 3 0.16% LAC 3 0.16% CCoAOMT 3 0.16% SQE 3 0.16% MVD 3 0.16% MVK 3 0.16% CYP80F1 2 0.11% TYDC_DDC 2 0.11% SMO1/SMO2 2 0.11% DWF1 2 0.11% DET2 2 0.11% HMGS 2 0.11% DXR 2 0.11% ADC 1 0.05% 6OMT_4OMT_SOMT 1 0.05% ODC 1 0.05% HPPR 1 0.05% DWF7 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HYD1 1 0.05% FK 1 0.05% PMK 1 0.05% IDI 1 0.05% HDR/IspH 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% CMK/IspE 1 0.05% HMGR 1 0.05% MCT/IspD 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 194 11 POD (115) View species results
Terpenoid pathway 146 18 BAHD (50) View species results
Alkaloid pathway 126 18 T3O (30) View species results
Flavonoid pathway 69 8 UFGT (25) View species results
Rosmarinic acid pathway 62 7 C4H (35) View species results
Steroid pathway 36 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 850 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Pappscaffold_10016080 Alkaloid LAMT low borderline
Pappscaffold_20030250 Alkaloid LAMT medium borderline
Pappscaffold_30063820 Alkaloid LAMT low borderline
Pappscaffold_30065710 Alkaloid LAMT medium borderline
Pappscaffold_30065760 Alkaloid LAMT medium borderline
Pappscaffold_30066310 Alkaloid LAMT medium pass
Pappscaffold_30066350 Alkaloid LAMT medium borderline
Pappscaffold_40074590 Alkaloid LAMT medium borderline
Pappscaffold_50117990 Alkaloid LAMT low borderline
Pappscaffold_60149060 Alkaloid LAMT medium pass
Pappscaffold_70174450 Alkaloid LAMT medium borderline
Pappscaffold_70174460 Alkaloid LAMT medium borderline
Pappscaffold_80186450 Alkaloid LAMT low borderline