Plagiochasma appendiculatum (plagiochasma_appendiculatum)
Imported from atlas release summary for Plagiochasma appendiculatum.
633
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
633
Candidate Genes
C4H
7.39%
C3'H/CYP98A
7.12%
POD
6.32%
CYP76
4.89%
IFS
4.84%
BAHD
4.62%
T3O
4.14%
4CL
3.51%
Other Families
57.17%
More Families (97)
DWF4/CYP90B1
66
3.51%
NMT
57
3.03%
F3H
43
2.28%
STR
37
1.97%
BR6OX2/CYP85A2
34
1.81%
7DLGT
32
1.7%
F3'H/CYP75B
32
1.7%
UGT
32
1.7%
H6H
31
1.65%
UFGT
28
1.49%
CSE
28
1.49%
CAD
24
1.28%
IFR
22
1.17%
GS
21
1.12%
F3'5'H/CYP75A
21
1.12%
PAL
21
1.12%
TRI/TRII
19
1.01%
RAS
19
1.01%
CODM/T6ODM
18
0.96%
PYKS
18
0.96%
HCT
18
0.96%
IO
17
0.9%
TPS
17
0.9%
COMT
16
0.85%
CAS
16
0.85%
T16H
15
0.8%
SLS
14
0.74%
SGD
14
0.74%
CPD/CYP90A1
14
0.74%
CYP71
14
0.74%
G8O/G8H
13
0.69%
LAMT
13
0.69%
CHS
13
0.69%
COR
12
0.64%
ANR
12
0.64%
BR6OX1/CYP85A1
12
0.64%
SMT1/SMT2/SMT3
12
0.64%
CYP90D1
11
0.58%
ROT3/CYP90C1
11
0.58%
CYP51G1
11
0.58%
CYP80B1
8
0.43%
CYP719
8
0.43%
DFR
8
0.43%
CCR
8
0.43%
TAT
8
0.43%
16OMT
7
0.37%
CNMT
7
0.37%
FNS
7
0.37%
F5H/CYP84A
7
0.37%
NCS
6
0.32%
7DLH
6
0.32%
GES
6
0.32%
AACT
6
0.32%
ANS/LDOX
5
0.27%
CPR
5
0.27%
SQS/FDFT1
5
0.27%
FPPS
5
0.27%
GGPPS
5
0.27%
PMT
4
0.21%
MPO
4
0.21%
8HGO
4
0.21%
CHI
4
0.21%
DXS
4
0.21%
TDC
3
0.16%
XMT_MXMT_DXMT
3
0.16%
ISY
3
0.16%
BBE
3
0.16%
FLS
3
0.16%
LAC
3
0.16%
CCoAOMT
3
0.16%
SQE
3
0.16%
MVD
3
0.16%
MVK
3
0.16%
CYP80F1
2
0.11%
TYDC_DDC
2
0.11%
SMO1/SMO2
2
0.11%
DWF1
2
0.11%
DET2
2
0.11%
HMGS
2
0.11%
DXR
2
0.11%
ADC
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
ODC
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
DWF5
1
0.05%
HYD1
1
0.05%
FK
1
0.05%
PMK
1
0.05%
IDI
1
0.05%
HDR/IspH
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
CMK/IspE
1
0.05%
HMGR
1
0.05%
MCT/IspD
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 194 | 11 | POD (115) | View species results |
| Terpenoid pathway | 146 | 18 | BAHD (50) | View species results |
| Alkaloid pathway | 126 | 18 | T3O (30) | View species results |
| Flavonoid pathway | 69 | 8 | UFGT (25) | View species results |
| Rosmarinic acid pathway | 62 | 7 | C4H (35) | View species results |
| Steroid pathway | 36 | 12 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 850 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pappscaffold_10018300 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Pappscaffold_20022650 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_20025270 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_20025290 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_20038330 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pappscaffold_30048090 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_30051170 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pappscaffold_30058190 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Pappscaffold_40075820 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Pappscaffold_50098670 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_50106010 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pappscaffold_50106700 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_60142400 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pappscaffold_60149590 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Pappscaffold_70162130 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_70162670 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_70162680 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pappscaffold_70178210 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pappscaffold_80198790 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |