PlantSME Plant secondary metabolism enzyme database

Platycodon grandiflorus (platycodon_grandiflorus)

Imported from atlas release summary for Platycodon grandiflorus.

2177
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.98% Alkaloid pathway 22.19% Phenylpropanoid pathway 18.83% Flavonoid pathway 14.15% Rosmarinic acid pathway 9.51% Steroid pathway 6.34%
Family Distribution
C4H 6.53% C3'H/CYP98A 5.71% BAHD 5.55% 4CL 5.33% UGT 4.57% UFGT 4.03% 7DLGT 3.89% IFS 3.54%
Other Families 60.86%
More Families (95)
CYP76 166 3.24% POD 165 3.22% T3O 149 2.91% NMT 130 2.54% DWF4/CYP90B1 116 2.27% F3H 115 2.25% STR 113 2.21% F3'H/CYP75B 96 1.88% CAD 78 1.52% BR6OX2/CYP85A2 75 1.47% CAS 74 1.45% SMT1/SMT2/SMT3 73 1.43% H6H 68 1.33% CODM/T6ODM 65 1.27% BBE 63 1.23% CYP71 60 1.17% SGD 59 1.15% LAC 56 1.09% TAT 54 1.06% CSE 51 1.0% 7DLH 50 0.98% TRI/TRII 49 0.96% GS 48 0.94% IFR 47 0.92% HCT 46 0.9% TPS 44 0.86% T16H 43 0.84% IO 41 0.8% CYP90D1 40 0.78% PAL 39 0.76% GES 38 0.74% FNS 38 0.74% ANR 37 0.72% SLS 36 0.7% G8O/G8H 35 0.68% COMT 33 0.64% GGPPS 33 0.64% PYKS 29 0.57% F3'5'H/CYP75A 29 0.57% COR 28 0.55% CCR 28 0.55% CPD/CYP90A1 26 0.51% CYP51G1 26 0.51% PMT 24 0.47% 8HGO 23 0.45% 16OMT 23 0.45% F5H/CYP84A 23 0.45% RAS 21 0.41% NCS 20 0.39% FPPS 20 0.39% ANS/LDOX 18 0.35% BR6OX1/CYP85A1 18 0.35% CPR 17 0.33% ROT3/CYP90C1 14 0.27% DFR 13 0.25% DXS 12 0.23% LAMT 11 0.21% HPPR 11 0.21% MPO 10 0.2% HMGR 9 0.18% CNMT 8 0.16% DET2 8 0.16% ADC 7 0.14% CYP719 7 0.14% SQS/FDFT1 7 0.14% SQE 7 0.14% AACT 7 0.14% ISY 6 0.12% CHS 6 0.12% CCoAOMT 6 0.12% PMK 6 0.12% CHI 5 0.1% MVD 5 0.1% HDS/IspG 5 0.1% CYP80F1 4 0.08% SMO1/SMO2 4 0.08% MVK 4 0.08% IDI 4 0.08% TYDC_DDC 3 0.06% CPI1 3 0.06% DXR 3 0.06% HDR/IspH 3 0.06% CMK/IspE 3 0.06% XMT_MXMT_DXMT 2 0.04% TDC 2 0.04% DWF7 2 0.04% MCT/IspD 2 0.04% MDS/IspF 2 0.04% HMGS 2 0.04% CYP80B1 1 0.02% FLS 1 0.02% DWF1 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF5 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 631 19 BAHD (233) View species results
Alkaloid pathway 483 20 7DLGT (90) View species results
Phenylpropanoid pathway 410 11 POD (153) View species results
Flavonoid pathway 308 12 UFGT (194) View species results
Rosmarinic acid pathway 207 7 C4H (67) View species results
Steroid pathway 138 13 CAS (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1862 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 351 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
PLgraScaffold47000299860.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
PLgraScaffold47000299870.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
PLgraScaffold47000299900.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
PLgraScaffold48460326080.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
PLgraScaffold48610328710.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
PLgraScaffold5360343100.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
PLgraScaffold5530345260.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
PLgraScaffold5530345270.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
PLgraScaffold7600371780.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
PLgraScaffold7650372330.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
PLgraScaffold7810374260.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
PLgraScaffold7810374270.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH
PLgraScaffold9410394210.1 Alkaloid BBE medium borderline BBE__00007__sp_Q9FZC4_FOX1_ARATH