Platycodon grandiflorus (platycodon_grandiflorus)
Imported from atlas release summary for Platycodon grandiflorus.
2177
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2177
Candidate Genes
C4H
6.53%
C3'H/CYP98A
5.71%
BAHD
5.55%
4CL
5.33%
UGT
4.57%
UFGT
4.03%
7DLGT
3.89%
IFS
3.54%
Other Families
60.86%
More Families (95)
CYP76
166
3.24%
POD
165
3.22%
T3O
149
2.91%
NMT
130
2.54%
DWF4/CYP90B1
116
2.27%
F3H
115
2.25%
STR
113
2.21%
F3'H/CYP75B
96
1.88%
CAD
78
1.52%
BR6OX2/CYP85A2
75
1.47%
CAS
74
1.45%
SMT1/SMT2/SMT3
73
1.43%
H6H
68
1.33%
CODM/T6ODM
65
1.27%
BBE
63
1.23%
CYP71
60
1.17%
SGD
59
1.15%
LAC
56
1.09%
TAT
54
1.06%
CSE
51
1.0%
7DLH
50
0.98%
TRI/TRII
49
0.96%
GS
48
0.94%
IFR
47
0.92%
HCT
46
0.9%
TPS
44
0.86%
T16H
43
0.84%
IO
41
0.8%
CYP90D1
40
0.78%
PAL
39
0.76%
GES
38
0.74%
FNS
38
0.74%
ANR
37
0.72%
SLS
36
0.7%
G8O/G8H
35
0.68%
COMT
33
0.64%
GGPPS
33
0.64%
PYKS
29
0.57%
F3'5'H/CYP75A
29
0.57%
COR
28
0.55%
CCR
28
0.55%
CPD/CYP90A1
26
0.51%
CYP51G1
26
0.51%
PMT
24
0.47%
8HGO
23
0.45%
16OMT
23
0.45%
F5H/CYP84A
23
0.45%
RAS
21
0.41%
NCS
20
0.39%
FPPS
20
0.39%
ANS/LDOX
18
0.35%
BR6OX1/CYP85A1
18
0.35%
CPR
17
0.33%
ROT3/CYP90C1
14
0.27%
DFR
13
0.25%
DXS
12
0.23%
LAMT
11
0.21%
HPPR
11
0.21%
MPO
10
0.2%
HMGR
9
0.18%
CNMT
8
0.16%
DET2
8
0.16%
ADC
7
0.14%
CYP719
7
0.14%
SQS/FDFT1
7
0.14%
SQE
7
0.14%
AACT
7
0.14%
ISY
6
0.12%
CHS
6
0.12%
CCoAOMT
6
0.12%
PMK
6
0.12%
CHI
5
0.1%
MVD
5
0.1%
HDS/IspG
5
0.1%
CYP80F1
4
0.08%
SMO1/SMO2
4
0.08%
MVK
4
0.08%
IDI
4
0.08%
TYDC_DDC
3
0.06%
CPI1
3
0.06%
DXR
3
0.06%
HDR/IspH
3
0.06%
CMK/IspE
3
0.06%
XMT_MXMT_DXMT
2
0.04%
TDC
2
0.04%
DWF7
2
0.04%
MCT/IspD
2
0.04%
MDS/IspF
2
0.04%
HMGS
2
0.04%
CYP80B1
1
0.02%
FLS
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 631 | 19 | BAHD (233) | View species results |
| Alkaloid pathway | 483 | 20 | 7DLGT (90) | View species results |
| Phenylpropanoid pathway | 410 | 11 | POD (153) | View species results |
| Flavonoid pathway | 308 | 12 | UFGT (194) | View species results |
| Rosmarinic acid pathway | 207 | 7 | C4H (67) | View species results |
| Steroid pathway | 138 | 13 | CAS (64) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1862 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 351 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PLgraScaffold2360116590.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| PLgraScaffold2360116600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| PLgraScaffold25770130800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold26480134740.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| PLgraScaffold28450145660.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold29430151130.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| PLgraScaffold29430151140.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| PLgraScaffold29430151180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| PLgraScaffold29810153230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold29810153230.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold30540157780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold3090159230.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold31710163600.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| PLgraScaffold32130165970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold32130165970.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold32130165970.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold33780173520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold3610185690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold3610185690.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold3610185700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold36280186270.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold39590199220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold39600199570.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold40010201790.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| PLgraScaffold40440203560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold40730205630.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| PLgraScaffold43530225930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold43530225930.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold43630228440.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| PLgraScaffold43630228450.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| PLgraScaffold43740231410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold43750231580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold43750231580.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold44090238830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold44090238830.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold44540249170.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| PLgraScaffold45180264450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold46320287670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold46740295170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold46760295830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold47470309240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold47470309240.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold47470309240.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold48410325070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold48410325070.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold48790331280.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold500337960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold5080338990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold5080339000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| PLgraScaffold5080339000.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |