PlantSME Plant secondary metabolism enzyme database

Pyrus bretschneideri (pyrus_bretschneideri)

Imported from atlas release summary for Pyrus bretschneideri.

2763
Candidate Protein Records
2298
Pathway-Level Records
5664
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.72% Alkaloid pathway 23.32% Phenylpropanoid pathway 19.93% Flavonoid pathway 14.19% Rosmarinic acid pathway 7.22% Steroid pathway 5.61%
Family Distribution
C4H 6.18% C3'H/CYP98A 5.93% BAHD 5.4% UGT 4.82% 7DLGT 4.04% UFGT 3.94% IFS 3.9% CYP76 3.78%
Other Families 62.01%
More Families (96)
F3H 196 3.46% POD 194 3.43% 4CL 171 3.02% T3O 159 2.81% DWF4/CYP90B1 143 2.52% H6H 122 2.15% BR6OX2/CYP85A2 105 1.85% F3'H/CYP75B 100 1.77% NMT 99 1.75% CODM/T6ODM 98 1.73% STR 95 1.68% CAD 95 1.68% CAS 78 1.38% LAC 73 1.29% GS 70 1.24% IFR 63 1.11% IO 62 1.09% CYP71 62 1.09% SGD 61 1.08% PYKS 60 1.06% CSE 57 1.01% TPS 54 0.95% CYP90D1 52 0.92% TRI/TRII 51 0.9% GES 50 0.88% SMT1/SMT2/SMT3 46 0.81% 7DLH 45 0.79% G8O/G8H 45 0.79% F3'5'H/CYP75A 43 0.76% HCT 43 0.76% ANR 42 0.74% BBE 41 0.72% TAT 40 0.71% NCS 39 0.69% CCR 39 0.69% F5H/CYP84A 39 0.69% SLS 38 0.67% COMT 38 0.67% RAS 35 0.62% LAMT 32 0.56% PMT 31 0.55% T16H 30 0.53% BR6OX1/CYP85A1 28 0.49% DFR 26 0.46% 16OMT 25 0.44% FNS 25 0.44% COR 24 0.42% SQE 21 0.37% CHS 20 0.35% ANS/LDOX 18 0.32% CYP51G1 17 0.3% CYP719 16 0.28% 8HGO 15 0.26% MPO 14 0.25% AACT 14 0.25% ISY 11 0.19% ROT3/CYP90C1 11 0.19% CHI 10 0.18% FPPS 10 0.18% TYDC_DDC 9 0.16% PAL 9 0.16% CCoAOMT 9 0.16% CPD/CYP90A1 9 0.16% CNMT 8 0.14% HPPR 8 0.14% SQS/FDFT1 8 0.14% CYP80B1 7 0.12% CPR 7 0.12% GGPPS 7 0.12% SMO1/SMO2 6 0.11% CYP80F1 5 0.09% DWF7 5 0.09% HMGS 5 0.09% HMGR 5 0.09% MCT/IspD 5 0.09% MVD 5 0.09% DXS 5 0.09% TDC 4 0.07% CPI1 4 0.07% FK 4 0.07% MVK 4 0.07% PMK 4 0.07% DXR 4 0.07% FLS 3 0.05% DET2 3 0.05% HYD1 3 0.05% MDS/IspF 3 0.05% ODC 2 0.04% CMK/IspE 2 0.04% HDS/IspG 2 0.04% HDR/IspH 2 0.04% 6OMT_4OMT_SOMT 1 0.02% ADC 1 0.02% DWF5 1 0.02% DWF1 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 683 18 UGT (251) View species results
Alkaloid pathway 536 23 7DLGT (131) View species results
Phenylpropanoid pathway 458 12 POD (177) View species results
Flavonoid pathway 326 13 UFGT (211) View species results
Rosmarinic acid pathway 166 7 C4H (69) View species results
Steroid pathway 129 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2137 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 384 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Pbre01G0003330 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Pbre01G0011220 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Pbre01G0011510 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Pbre01G0011920 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Pbre02G0003850 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Pbre02G0003890 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Pbre02G0006000 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Pbre02G0006150 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Pbre02G0010300 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Pbre02G0011750 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Pbre02G0013340 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Pbre03G0000480 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Pbre03G0001410 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Pbre03G0010980 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Pbre04G0000660 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Pbre04G0008760 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
Pbre04G0010030 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Pbre05G0012230 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Pbre06G0003630 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Pbre07G0002360 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Pbre07G0002390 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Pbre07G0013910 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Pbre07G0014370 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Pbre07G0014470 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Pbre08G0001780 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Pbre08G0006650 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Pbre08G0006660 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Pbre08G0007850 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pbre08G0008350 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Pbre08G0012780 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Pbre09G0004030 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Pbre09G0004210 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Pbre09G0013560 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Pbre09G0013760 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Pbre09G0013770 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Pbre09G0020900 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Pbre10G0001710 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Pbre10G0003010 Alkaloid NMT low borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Pbre10G0007690 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Pbre10G0019070 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Pbre10G0022270 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Pbre10G0022340 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Pbre10G0022350 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Pbre10G0023290 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Pbre11G0000380 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Pbre11G0001480 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Pbre11G0005960 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Pbre11G0008780 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Pbre11G0021810 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Pbre11G0022050 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH