PlantSME Plant secondary metabolism enzyme database

Ricciocarpus natans (ricciocarpus_natans)

Imported from atlas release summary for Ricciocarpus natans.

578
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 31.66% Terpenoid pathway 22.32% Alkaloid pathway 20.76% Flavonoid pathway 10.21% Rosmarinic acid pathway 9.34% Steroid pathway 5.71%
Family Distribution
POD 8.98% C4H 6.76% BAHD 6.03% C3'H/CYP98A 5.43% 4CL 5.02% CYP76 3.82% NMT 3.48% STR 2.68%
Other Families 57.8%
More Families (95)
T3O 40 2.68% IFS 39 2.61% DWF4/CYP90B1 33 2.21% TRI/TRII 30 2.01% BR6OX2/CYP85A2 30 2.01% F3H 27 1.81% PAL 24 1.61% IFR 24 1.61% PYKS 23 1.54% F3'H/CYP75B 22 1.47% CSE 21 1.41% SMT1/SMT2/SMT3 21 1.41% UGT 21 1.41% GS 20 1.34% 7DLGT 20 1.34% CAD 20 1.34% UFGT 19 1.27% LAMT 18 1.21% HCT 18 1.21% CHS 17 1.14% H6H 16 1.07% F3'5'H/CYP75A 16 1.07% RAS 15 1.0% IO 14 0.94% CAS 12 0.8% CYP71 12 0.8% CODM/T6ODM 11 0.74% G8O/G8H 11 0.74% ANR 11 0.74% T16H 10 0.67% SLS 9 0.6% COMT 9 0.6% TPS 9 0.6% CNMT 8 0.54% FNS 8 0.54% LAC 8 0.54% TDC 7 0.47% COR 7 0.47% BR6OX1/CYP85A1 7 0.47% GGPPS 7 0.47% AACT 7 0.47% CYP719 6 0.4% TYDC_DDC 6 0.4% DFR 6 0.4% CPR 6 0.4% TAT 6 0.4% CYP90D1 6 0.4% CPD/CYP90A1 6 0.4% NCS 5 0.33% 8HGO 5 0.33% F5H/CYP84A 5 0.33% ROT3/CYP90C1 5 0.33% DET2 5 0.33% FPPS 5 0.33% 6OMT_4OMT_SOMT 4 0.27% PMT 4 0.27% SGD 4 0.27% ANS/LDOX 4 0.27% CCR 4 0.27% CYP51G1 4 0.27% SQS/FDFT1 4 0.27% CYP80B1 3 0.2% GES 3 0.2% ISY 3 0.2% BBE 3 0.2% ODC 3 0.2% CHI 3 0.2% SMO1/SMO2 3 0.2% MVK 3 0.2% HMGS 3 0.2% MVD 3 0.2% CYP80F1 2 0.13% XMT_MXMT_DXMT 2 0.13% 7DLH 2 0.13% MPO 2 0.13% DWF5 2 0.13% SQE 2 0.13% DWF1 2 0.13% MCT/IspD 2 0.13% ADC 1 0.07% CCoAOMT 1 0.07% HPPR 1 0.07% DWF7 1 0.07% HYD1 1 0.07% FK 1 0.07% CPI1 1 0.07% IDI 1 0.07% DXS 1 0.07% HMGR 1 0.07% DXR 1 0.07% PMK 1 0.07% HDR/IspH 1 0.07% HDS/IspG 1 0.07% CMK/IspE 1 0.07% MDS/IspF 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 9 POD (119) View species results
Terpenoid pathway 129 19 BAHD (61) View species results
Alkaloid pathway 120 19 TRI/TRII (23) View species results
Flavonoid pathway 59 7 CHS (17) View species results
Rosmarinic acid pathway 54 7 C4H (23) View species results
Steroid pathway 33 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 521 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 123 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
Rnatscaffold_10001920 Alkaloid 7DLGT low borderline
Rnatscaffold_20035970 Alkaloid 7DLGT medium pass
Rnatscaffold_20041300 Alkaloid 7DLGT low borderline
Rnatscaffold_20041310 Alkaloid 7DLGT low borderline
Rnatscaffold_20041320 Alkaloid 7DLGT low borderline
Rnatscaffold_220047790 Alkaloid 7DLGT low borderline
Rnatscaffold_30073770 Alkaloid 7DLGT low borderline
Rnatscaffold_30075630 Alkaloid 7DLGT medium pass
Rnatscaffold_30080620 Alkaloid 7DLGT medium pass
Rnatscaffold_40109710 Alkaloid 7DLGT medium pass
Rnatscaffold_40109730 Alkaloid 7DLGT low borderline
Rnatscaffold_50134360 Alkaloid 7DLGT low borderline
Rnatscaffold_60154920 Alkaloid 7DLGT low borderline
Rnatscaffold_60158540 Alkaloid 7DLGT medium pass
Rnatscaffold_60159610 Alkaloid 7DLGT medium pass
Rnatscaffold_60159620 Alkaloid 7DLGT low borderline
Rnatscaffold_70166220 Alkaloid 7DLGT low borderline
Rnatscaffold_70174190 Alkaloid 7DLGT low borderline
Rnatscaffold_70177640 Alkaloid 7DLGT medium pass
Rnatscaffold_80208000 Alkaloid 7DLGT low borderline