PlantSME Plant secondary metabolism enzyme database

Ricciocarpus natans (ricciocarpus_natans)

Imported from atlas release summary for Ricciocarpus natans.

578
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 9 POD (119) View species results
Terpenoid pathway 129 19 BAHD (61) View species results
Alkaloid pathway 120 19 TRI/TRII (23) View species results
Flavonoid pathway 59 7 CHS (17) View species results
Rosmarinic acid pathway 54 7 C4H (23) View species results
Steroid pathway 33 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 521 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 123 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Rnatscaffold_10002690 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_10016610 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_10016800 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_10016990 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_10017000 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_20031370 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_20037460 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_20042190 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_30062820 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_30075960 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_30076780 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_30079200 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_40097490 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_40097760 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_40103620 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_40106470 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_50125190 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_50125800 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_50125910 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_50126770 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_50126780 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_50132570 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_50135710 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_60156580 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_70170110 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_70184160 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_70184170 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_80187030 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_80202590 Steroid DWF4/CYP90B1 low borderline
Rnatscaffold_80210160 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_80210170 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_80210180 Steroid DWF4/CYP90B1 medium borderline
Rnatscaffold_80210800 Steroid DWF4/CYP90B1 low borderline