Ricciocarpus natans (ricciocarpus_natans)
Imported from atlas release summary for Ricciocarpus natans.
578
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
578
Candidate Genes
POD
8.98%
C4H
6.76%
BAHD
6.03%
C3'H/CYP98A
5.43%
4CL
5.02%
CYP76
3.82%
NMT
3.48%
STR
2.68%
Other Families
57.8%
More Families (95)
T3O
40
2.68%
IFS
39
2.61%
DWF4/CYP90B1
33
2.21%
TRI/TRII
30
2.01%
BR6OX2/CYP85A2
30
2.01%
F3H
27
1.81%
PAL
24
1.61%
IFR
24
1.61%
PYKS
23
1.54%
F3'H/CYP75B
22
1.47%
CSE
21
1.41%
SMT1/SMT2/SMT3
21
1.41%
UGT
21
1.41%
GS
20
1.34%
7DLGT
20
1.34%
CAD
20
1.34%
UFGT
19
1.27%
LAMT
18
1.21%
HCT
18
1.21%
CHS
17
1.14%
H6H
16
1.07%
F3'5'H/CYP75A
16
1.07%
RAS
15
1.0%
IO
14
0.94%
CAS
12
0.8%
CYP71
12
0.8%
CODM/T6ODM
11
0.74%
G8O/G8H
11
0.74%
ANR
11
0.74%
T16H
10
0.67%
SLS
9
0.6%
COMT
9
0.6%
TPS
9
0.6%
CNMT
8
0.54%
FNS
8
0.54%
LAC
8
0.54%
TDC
7
0.47%
COR
7
0.47%
BR6OX1/CYP85A1
7
0.47%
GGPPS
7
0.47%
AACT
7
0.47%
CYP719
6
0.4%
TYDC_DDC
6
0.4%
DFR
6
0.4%
CPR
6
0.4%
TAT
6
0.4%
CYP90D1
6
0.4%
CPD/CYP90A1
6
0.4%
NCS
5
0.33%
8HGO
5
0.33%
F5H/CYP84A
5
0.33%
ROT3/CYP90C1
5
0.33%
DET2
5
0.33%
FPPS
5
0.33%
6OMT_4OMT_SOMT
4
0.27%
PMT
4
0.27%
SGD
4
0.27%
ANS/LDOX
4
0.27%
CCR
4
0.27%
CYP51G1
4
0.27%
SQS/FDFT1
4
0.27%
CYP80B1
3
0.2%
GES
3
0.2%
ISY
3
0.2%
BBE
3
0.2%
ODC
3
0.2%
CHI
3
0.2%
SMO1/SMO2
3
0.2%
MVK
3
0.2%
HMGS
3
0.2%
MVD
3
0.2%
CYP80F1
2
0.13%
XMT_MXMT_DXMT
2
0.13%
7DLH
2
0.13%
MPO
2
0.13%
DWF5
2
0.13%
SQE
2
0.13%
DWF1
2
0.13%
MCT/IspD
2
0.13%
ADC
1
0.07%
CCoAOMT
1
0.07%
HPPR
1
0.07%
DWF7
1
0.07%
HYD1
1
0.07%
FK
1
0.07%
CPI1
1
0.07%
IDI
1
0.07%
DXS
1
0.07%
HMGR
1
0.07%
DXR
1
0.07%
PMK
1
0.07%
HDR/IspH
1
0.07%
HDS/IspG
1
0.07%
CMK/IspE
1
0.07%
MDS/IspF
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 183 | 9 | POD (119) | View species results |
| Terpenoid pathway | 129 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 120 | 19 | TRI/TRII (23) | View species results |
| Flavonoid pathway | 59 | 7 | CHS (17) | View species results |
| Rosmarinic acid pathway | 54 | 7 | C4H (23) | View species results |
| Steroid pathway | 33 | 13 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 521 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 123 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rnatscaffold_10001370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_10002280 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnatscaffold_10010070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_10015780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_10018100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_20034830 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnatscaffold_20042610 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_220049420 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_220050420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_230052530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_230052540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_270057980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_290061070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30063450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30067890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30069330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30069460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30070990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30071240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30071840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30075510 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30075540 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30078450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30078460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_30078480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_40102130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_40105030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_40106500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_50121220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_50121230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_50137120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_60151930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_60156590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_70177620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_70178040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_70180370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_80185510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_80185570 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_80193160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnatscaffold_80195770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |