Ricciocarpus natans (ricciocarpus_natans)
Imported from atlas release summary for Ricciocarpus natans.
845
Candidate Protein Records
578
Pathway-Level Records
1493
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1493
Family-Level Calls
POD
8.98%
C4H
6.76%
BAHD
6.03%
C3'H/CYP98A
5.43%
4CL
5.02%
CYP76
3.82%
NMT
3.48%
STR
2.68%
Other Families
57.8%
More Families (95)
T3O
40
2.68%
IFS
39
2.61%
DWF4/CYP90B1
33
2.21%
TRI/TRII
30
2.01%
BR6OX2/CYP85A2
30
2.01%
F3H
27
1.81%
PAL
24
1.61%
IFR
24
1.61%
PYKS
23
1.54%
F3'H/CYP75B
22
1.47%
CSE
21
1.41%
SMT1/SMT2/SMT3
21
1.41%
UGT
21
1.41%
GS
20
1.34%
7DLGT
20
1.34%
CAD
20
1.34%
UFGT
19
1.27%
LAMT
18
1.21%
HCT
18
1.21%
CHS
17
1.14%
H6H
16
1.07%
F3'5'H/CYP75A
16
1.07%
RAS
15
1.0%
IO
14
0.94%
CAS
12
0.8%
CYP71
12
0.8%
CODM/T6ODM
11
0.74%
G8O/G8H
11
0.74%
ANR
11
0.74%
T16H
10
0.67%
SLS
9
0.6%
COMT
9
0.6%
TPS
9
0.6%
CNMT
8
0.54%
FNS
8
0.54%
LAC
8
0.54%
TDC
7
0.47%
COR
7
0.47%
BR6OX1/CYP85A1
7
0.47%
GGPPS
7
0.47%
AACT
7
0.47%
CYP719
6
0.4%
TYDC_DDC
6
0.4%
DFR
6
0.4%
CPR
6
0.4%
TAT
6
0.4%
CYP90D1
6
0.4%
CPD/CYP90A1
6
0.4%
NCS
5
0.33%
8HGO
5
0.33%
F5H/CYP84A
5
0.33%
ROT3/CYP90C1
5
0.33%
DET2
5
0.33%
FPPS
5
0.33%
6OMT_4OMT_SOMT
4
0.27%
PMT
4
0.27%
SGD
4
0.27%
ANS/LDOX
4
0.27%
CCR
4
0.27%
CYP51G1
4
0.27%
SQS/FDFT1
4
0.27%
CYP80B1
3
0.2%
GES
3
0.2%
ISY
3
0.2%
BBE
3
0.2%
ODC
3
0.2%
CHI
3
0.2%
SMO1/SMO2
3
0.2%
MVK
3
0.2%
HMGS
3
0.2%
MVD
3
0.2%
CYP80F1
2
0.13%
XMT_MXMT_DXMT
2
0.13%
7DLH
2
0.13%
MPO
2
0.13%
DWF5
2
0.13%
SQE
2
0.13%
DWF1
2
0.13%
MCT/IspD
2
0.13%
ADC
1
0.07%
CCoAOMT
1
0.07%
HPPR
1
0.07%
DWF7
1
0.07%
HYD1
1
0.07%
FK
1
0.07%
CPI1
1
0.07%
IDI
1
0.07%
DXS
1
0.07%
HMGR
1
0.07%
DXR
1
0.07%
PMK
1
0.07%
HDR/IspH
1
0.07%
HDS/IspG
1
0.07%
CMK/IspE
1
0.07%
MDS/IspF
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 183 | 9 | POD (119) | View species results |
| Terpenoid pathway | 129 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 120 | 19 | TRI/TRII (23) | View species results |
| Flavonoid pathway | 59 | 7 | CHS (17) | View species results |
| Rosmarinic acid pathway | 54 | 7 | C4H (23) | View species results |
| Steroid pathway | 33 | 13 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 521 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 123 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rnatscaffold_50134720 | Flavonoid | IFS | medium | borderline |
| Rnatscaffold_50136800 | Flavonoid | IFS | low | borderline |
| Rnatscaffold_50136940 | Flavonoid | IFS | low | borderline |
| Rnatscaffold_70167630 | Flavonoid | IFS | low | borderline |
| Rnatscaffold_70184170 | Flavonoid | IFS | low | borderline |
| Rnatscaffold_80187000 | Flavonoid | IFS | low | borderline |
| Rnatscaffold_80187030 | Flavonoid | IFS | low | borderline |
| Rnatscaffold_80187650 | Flavonoid | IFS | low | borderline |
| Rnatscaffold_10006670 | Flavonoid | PAL | medium | pass |
| Rnatscaffold_10006690 | Flavonoid | PAL | high | pass |
| Rnatscaffold_10006720 | Flavonoid | PAL | medium | pass |
| Rnatscaffold_10007270 | Flavonoid | PAL | high | pass |
| Rnatscaffold_10010060 | Flavonoid | PAL | low | borderline |
| Rnatscaffold_10015950 | Flavonoid | PAL | high | pass |
| Rnatscaffold_80202560 | Flavonoid | PAL | high | pass |
| Rnatscaffold_80202600 | Flavonoid | PAL | high | pass |
| Rnatscaffold_10001920 | Flavonoid | UFGT | high | pass |
| Rnatscaffold_10015850 | Flavonoid | UFGT | low | borderline |
| Rnatscaffold_20035970 | Flavonoid | UFGT | high | pass |
| Rnatscaffold_20041300 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_20041310 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_20041320 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_30073770 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_30075630 | Flavonoid | UFGT | high | pass |
| Rnatscaffold_30080620 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_40109710 | Flavonoid | UFGT | high | pass |
| Rnatscaffold_40109730 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_50134360 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_60154920 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_60158540 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_60159610 | Flavonoid | UFGT | high | pass |
| Rnatscaffold_60159620 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_70166220 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_70177640 | Flavonoid | UFGT | medium | pass |
| Rnatscaffold_80208000 | Flavonoid | UFGT | low | borderline |
| Rnatscaffold_10005140 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_10017180 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_160023940 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_160024790 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_20043800 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_20045080 | Phenylpropanoid | 4CL | medium | pass |
| Rnatscaffold_270058780 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_30070300 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_320082640 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_320083070 | Phenylpropanoid | 4CL | medium | pass |
| Rnatscaffold_40109010 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_50123540 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_50126300 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_520143540 | Phenylpropanoid | 4CL | low | borderline |
| Rnatscaffold_60162360 | Phenylpropanoid | 4CL | low | borderline |