PlantSME Plant secondary metabolism enzyme database

Ricciocarpus natans (ricciocarpus_natans)

Imported from atlas release summary for Ricciocarpus natans.

578
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 9 POD (119) View species results
Terpenoid pathway 129 19 BAHD (61) View species results
Alkaloid pathway 120 19 TRI/TRII (23) View species results
Flavonoid pathway 59 7 CHS (17) View species results
Rosmarinic acid pathway 54 7 C4H (23) View species results
Steroid pathway 33 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 521 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 123 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Rnatscaffold_50132680 Alkaloid CODM/T6ODM medium borderline
Rnatscaffold_70184490 Alkaloid CODM/T6ODM medium borderline
Rnatscaffold_80192510 Alkaloid CODM/T6ODM medium borderline
Rnatscaffold_80203870 Alkaloid CODM/T6ODM medium borderline
Rnatscaffold_20035130 Alkaloid COR medium pass
Rnatscaffold_20043140 Alkaloid COR medium pass
Rnatscaffold_40099450 Alkaloid COR medium pass
Rnatscaffold_70168810 Alkaloid COR medium pass
Rnatscaffold_70175220 Alkaloid COR medium pass
Rnatscaffold_70182380 Alkaloid COR medium pass
Rnatscaffold_80202860 Alkaloid COR medium pass
Rnatscaffold_10000800 Alkaloid CYP719 low borderline
Rnatscaffold_10002690 Alkaloid CYP719 medium borderline
Rnatscaffold_20041820 Alkaloid CYP719 low borderline
Rnatscaffold_30069700 Alkaloid CYP719 medium borderline
Rnatscaffold_50121790 Alkaloid CYP719 medium borderline
Rnatscaffold_50127830 Alkaloid CYP719 medium borderline
Rnatscaffold_10007150 Alkaloid CYP80B1 medium borderline
Rnatscaffold_40109160 Alkaloid CYP80B1 medium borderline
Rnatscaffold_50125170 Alkaloid CYP80B1 medium borderline
Rnatscaffold_10000810 Alkaloid CYP80F1 medium borderline
Rnatscaffold_40103620 Alkaloid CYP80F1 medium borderline
Rnatscaffold_10016610 Alkaloid G8O/G8H medium borderline
Rnatscaffold_10018180 Alkaloid G8O/G8H medium borderline
Rnatscaffold_20043740 Alkaloid G8O/G8H medium borderline
Rnatscaffold_30075960 Alkaloid G8O/G8H medium borderline
Rnatscaffold_40098770 Alkaloid G8O/G8H medium borderline
Rnatscaffold_40102070 Alkaloid G8O/G8H medium borderline
Rnatscaffold_50123300 Alkaloid G8O/G8H medium borderline
Rnatscaffold_50136030 Alkaloid G8O/G8H low borderline
Rnatscaffold_70170110 Alkaloid G8O/G8H medium borderline
Rnatscaffold_80196140 Alkaloid G8O/G8H medium borderline
Rnatscaffold_80210800 Alkaloid G8O/G8H medium borderline
Rnatscaffold_20040770 Alkaloid GES low borderline
Rnatscaffold_30063470 Alkaloid GES low borderline
Rnatscaffold_50119680 Alkaloid GES low borderline
Rnatscaffold_10001830 Alkaloid GS high pass
Rnatscaffold_10012830 Alkaloid GS high pass
Rnatscaffold_200046320 Alkaloid GS low borderline
Rnatscaffold_20043770 Alkaloid GS medium pass
Rnatscaffold_320083830 Alkaloid GS low borderline
Rnatscaffold_40094120 Alkaloid GS low borderline
Rnatscaffold_40097930 Alkaloid GS high pass
Rnatscaffold_40098870 Alkaloid GS high pass
Rnatscaffold_40111100 Alkaloid GS low borderline
Rnatscaffold_440117370 Alkaloid GS low borderline
Rnatscaffold_50122520 Alkaloid GS low borderline
Rnatscaffold_50124900 Alkaloid GS high pass
Rnatscaffold_70170440 Alkaloid GS high pass
Rnatscaffold_80190000 Alkaloid GS low borderline