PlantSME Plant secondary metabolism enzyme database

Ricciocarpus natans (ricciocarpus_natans)

Imported from atlas release summary for Ricciocarpus natans.

578
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 9 POD (119) View species results
Terpenoid pathway 129 19 BAHD (61) View species results
Alkaloid pathway 120 19 TRI/TRII (23) View species results
Flavonoid pathway 59 7 CHS (17) View species results
Rosmarinic acid pathway 54 7 C4H (23) View species results
Steroid pathway 33 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 521 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 123 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Rnatscaffold_30062820 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_40097490 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_40098770 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_40101580 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_40101600 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_40102070 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_40106380 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_40110870 Flavonoid F3'H/CYP75B low borderline
Rnatscaffold_50125160 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_50136030 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_60152280 Flavonoid F3'H/CYP75B low borderline
Rnatscaffold_70170140 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_70177010 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_80187010 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_80199570 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_80210800 Flavonoid F3'H/CYP75B medium borderline
Rnatscaffold_10007730 Flavonoid F3H low borderline
Rnatscaffold_10009470 Flavonoid F3H medium borderline
Rnatscaffold_10017760 Flavonoid F3H low borderline
Rnatscaffold_20037570 Flavonoid F3H low borderline
Rnatscaffold_20041680 Flavonoid F3H medium borderline
Rnatscaffold_30062400 Flavonoid F3H medium borderline
Rnatscaffold_30064290 Flavonoid F3H medium borderline
Rnatscaffold_30064300 Flavonoid F3H medium borderline
Rnatscaffold_30068620 Flavonoid F3H medium pass
Rnatscaffold_30068980 Flavonoid F3H medium borderline
Rnatscaffold_30069000 Flavonoid F3H medium borderline
Rnatscaffold_30078070 Flavonoid F3H low borderline
Rnatscaffold_40099480 Flavonoid F3H medium borderline
Rnatscaffold_40101480 Flavonoid F3H medium borderline
Rnatscaffold_40106010 Flavonoid F3H medium pass
Rnatscaffold_40108760 Flavonoid F3H medium borderline
Rnatscaffold_40109820 Flavonoid F3H medium borderline
Rnatscaffold_40111430 Flavonoid F3H low borderline
Rnatscaffold_50127910 Flavonoid F3H medium borderline
Rnatscaffold_50132680 Flavonoid F3H medium borderline
Rnatscaffold_50136490 Flavonoid F3H medium borderline
Rnatscaffold_70184490 Flavonoid F3H medium borderline
Rnatscaffold_80186350 Flavonoid F3H low borderline
Rnatscaffold_80188170 Flavonoid F3H medium borderline
Rnatscaffold_80189900 Flavonoid F3H medium borderline
Rnatscaffold_80192510 Flavonoid F3H medium borderline
Rnatscaffold_80209880 Flavonoid F3H medium borderline
Rnatscaffold_10000440 Flavonoid FNS medium borderline
Rnatscaffold_10007850 Flavonoid FNS low borderline
Rnatscaffold_10016610 Flavonoid FNS medium borderline
Rnatscaffold_20032380 Flavonoid FNS medium borderline
Rnatscaffold_20038570 Flavonoid FNS medium borderline
Rnatscaffold_40097760 Flavonoid FNS medium borderline
Rnatscaffold_60156580 Flavonoid FNS medium borderline