PlantSME Plant secondary metabolism enzyme database

Ricciocarpus natans (ricciocarpus_natans)

Imported from atlas release summary for Ricciocarpus natans.

578
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 183 9 POD (119) View species results
Terpenoid pathway 129 19 BAHD (61) View species results
Alkaloid pathway 120 19 TRI/TRII (23) View species results
Flavonoid pathway 59 7 CHS (17) View species results
Rosmarinic acid pathway 54 7 C4H (23) View species results
Steroid pathway 33 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 521 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 123 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rnatscaffold_80206440 Rosmarinic Acid C4H medium pass
Rnatscaffold_80210160 Rosmarinic Acid C4H low borderline
Rnatscaffold_80210180 Rosmarinic Acid C4H low borderline
Rnatscaffold_80210800 Rosmarinic Acid C4H medium pass
Rnatscaffold_80211640 Rosmarinic Acid C4H low borderline
Rnatscaffold_10007670 Rosmarinic Acid CPR low borderline
Rnatscaffold_40110730 Rosmarinic Acid CPR medium pass
Rnatscaffold_50119320 Rosmarinic Acid CPR medium pass
Rnatscaffold_60157820 Rosmarinic Acid CPR low borderline
Rnatscaffold_60161960 Rosmarinic Acid CPR medium pass
Rnatscaffold_70183750 Rosmarinic Acid CPR medium pass
Rnatscaffold_80194210 Rosmarinic Acid HPPR medium pass
Rnatscaffold_10006670 Rosmarinic Acid PAL medium pass
Rnatscaffold_10006690 Rosmarinic Acid PAL high pass
Rnatscaffold_10006720 Rosmarinic Acid PAL medium pass
Rnatscaffold_10007270 Rosmarinic Acid PAL high pass
Rnatscaffold_10010060 Rosmarinic Acid PAL low borderline
Rnatscaffold_10015950 Rosmarinic Acid PAL high pass
Rnatscaffold_80202560 Rosmarinic Acid PAL high pass
Rnatscaffold_80202600 Rosmarinic Acid PAL high pass
Rnatscaffold_20037400 Rosmarinic Acid RAS low borderline
Rnatscaffold_20037970 Rosmarinic Acid RAS medium pass
Rnatscaffold_30062060 Rosmarinic Acid RAS low borderline
Rnatscaffold_30062550 Rosmarinic Acid RAS low borderline
Rnatscaffold_30066720 Rosmarinic Acid RAS medium pass
Rnatscaffold_50134540 Rosmarinic Acid RAS low borderline
Rnatscaffold_50134550 Rosmarinic Acid RAS low borderline
Rnatscaffold_70168830 Rosmarinic Acid RAS low borderline
Rnatscaffold_70177520 Rosmarinic Acid RAS low borderline
Rnatscaffold_70178630 Rosmarinic Acid RAS medium pass
Rnatscaffold_80186050 Rosmarinic Acid RAS low borderline
Rnatscaffold_80186070 Rosmarinic Acid RAS low borderline
Rnatscaffold_80209330 Rosmarinic Acid RAS medium pass
Rnatscaffold_80212820 Rosmarinic Acid RAS low borderline
Rnatscaffold_80212860 Rosmarinic Acid RAS medium pass
Rnatscaffold_20033750 Rosmarinic Acid TAT low borderline
Rnatscaffold_260055550 Rosmarinic Acid TAT medium pass
Rnatscaffold_40104270 Rosmarinic Acid TAT medium pass
Rnatscaffold_440117180 Rosmarinic Acid TAT medium pass
Rnatscaffold_50120490 Rosmarinic Acid TAT low borderline
Rnatscaffold_60163040 Rosmarinic Acid TAT medium pass