Ricciocarpus natans (ricciocarpus_natans)
Imported from atlas release summary for Ricciocarpus natans.
578
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
578
Candidate Genes
POD
8.98%
C4H
6.76%
BAHD
6.03%
C3'H/CYP98A
5.43%
4CL
5.02%
CYP76
3.82%
NMT
3.48%
STR
2.68%
Other Families
57.8%
More Families (95)
T3O
40
2.68%
IFS
39
2.61%
DWF4/CYP90B1
33
2.21%
TRI/TRII
30
2.01%
BR6OX2/CYP85A2
30
2.01%
F3H
27
1.81%
PAL
24
1.61%
IFR
24
1.61%
PYKS
23
1.54%
F3'H/CYP75B
22
1.47%
CSE
21
1.41%
SMT1/SMT2/SMT3
21
1.41%
UGT
21
1.41%
GS
20
1.34%
7DLGT
20
1.34%
CAD
20
1.34%
UFGT
19
1.27%
LAMT
18
1.21%
HCT
18
1.21%
CHS
17
1.14%
H6H
16
1.07%
F3'5'H/CYP75A
16
1.07%
RAS
15
1.0%
IO
14
0.94%
CAS
12
0.8%
CYP71
12
0.8%
CODM/T6ODM
11
0.74%
G8O/G8H
11
0.74%
ANR
11
0.74%
T16H
10
0.67%
SLS
9
0.6%
COMT
9
0.6%
TPS
9
0.6%
CNMT
8
0.54%
FNS
8
0.54%
LAC
8
0.54%
TDC
7
0.47%
COR
7
0.47%
BR6OX1/CYP85A1
7
0.47%
GGPPS
7
0.47%
AACT
7
0.47%
CYP719
6
0.4%
TYDC_DDC
6
0.4%
DFR
6
0.4%
CPR
6
0.4%
TAT
6
0.4%
CYP90D1
6
0.4%
CPD/CYP90A1
6
0.4%
NCS
5
0.33%
8HGO
5
0.33%
F5H/CYP84A
5
0.33%
ROT3/CYP90C1
5
0.33%
DET2
5
0.33%
FPPS
5
0.33%
6OMT_4OMT_SOMT
4
0.27%
PMT
4
0.27%
SGD
4
0.27%
ANS/LDOX
4
0.27%
CCR
4
0.27%
CYP51G1
4
0.27%
SQS/FDFT1
4
0.27%
CYP80B1
3
0.2%
GES
3
0.2%
ISY
3
0.2%
BBE
3
0.2%
ODC
3
0.2%
CHI
3
0.2%
SMO1/SMO2
3
0.2%
MVK
3
0.2%
HMGS
3
0.2%
MVD
3
0.2%
CYP80F1
2
0.13%
XMT_MXMT_DXMT
2
0.13%
7DLH
2
0.13%
MPO
2
0.13%
DWF5
2
0.13%
SQE
2
0.13%
DWF1
2
0.13%
MCT/IspD
2
0.13%
ADC
1
0.07%
CCoAOMT
1
0.07%
HPPR
1
0.07%
DWF7
1
0.07%
HYD1
1
0.07%
FK
1
0.07%
CPI1
1
0.07%
IDI
1
0.07%
DXS
1
0.07%
HMGR
1
0.07%
DXR
1
0.07%
PMK
1
0.07%
HDR/IspH
1
0.07%
HDS/IspG
1
0.07%
CMK/IspE
1
0.07%
MDS/IspF
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 183 | 9 | POD (119) | View species results |
| Terpenoid pathway | 129 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 120 | 19 | TRI/TRII (23) | View species results |
| Flavonoid pathway | 59 | 7 | CHS (17) | View species results |
| Rosmarinic acid pathway | 54 | 7 | C4H (23) | View species results |
| Steroid pathway | 33 | 13 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 521 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 123 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rnatscaffold_80187030 | Steroid | DWF4/CYP90B1 | medium | borderline |
| Rnatscaffold_80202590 | Steroid | DWF4/CYP90B1 | low | borderline |
| Rnatscaffold_80210160 | Steroid | DWF4/CYP90B1 | medium | borderline |
| Rnatscaffold_80210170 | Steroid | DWF4/CYP90B1 | medium | borderline |
| Rnatscaffold_80210180 | Steroid | DWF4/CYP90B1 | medium | borderline |
| Rnatscaffold_80210800 | Steroid | DWF4/CYP90B1 | low | borderline |
| Rnatscaffold_10013500 | Steroid | DWF5 | medium | pass |
| Rnatscaffold_30064450 | Steroid | DWF5 | medium | borderline |
| Rnatscaffold_10016660 | Steroid | DWF7 | medium | pass |
| Rnatscaffold_40108000 | Steroid | FK | high | pass |
| Rnatscaffold_30066120 | Steroid | HYD1 | high | pass |
| Rnatscaffold_10007150 | Steroid | ROT3/CYP90C1 | medium | borderline |
| Rnatscaffold_30069700 | Steroid | ROT3/CYP90C1 | medium | borderline |
| Rnatscaffold_50127830 | Steroid | ROT3/CYP90C1 | medium | pass |
| Rnatscaffold_80187010 | Steroid | ROT3/CYP90C1 | medium | borderline |
| Rnatscaffold_80196140 | Steroid | ROT3/CYP90C1 | medium | borderline |
| Rnatscaffold_10014470 | Steroid | SMO1/SMO2 | medium | pass |
| Rnatscaffold_540146410 | Steroid | SMO1/SMO2 | medium | pass |
| Rnatscaffold_80201220 | Steroid | SMO1/SMO2 | medium | pass |
| Rnatscaffold_10004900 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_20032620 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_20035740 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_20044060 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_20044830 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_220048300 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_230051830 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_300081980 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_30067340 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_30068430 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_30079320 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_40094270 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_40101180 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_40102330 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_420115000 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_50133760 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_50134270 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_510140920 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Rnatscaffold_570148560 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_70177430 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_80208240 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Rnatscaffold_440117700 | Steroid | SQE | low | borderline |
| Rnatscaffold_80187850 | Steroid | SQE | medium | pass |
| Rnatscaffold_10014930 | Steroid | SQS/FDFT1 | high | pass |
| Rnatscaffold_30078060 | Steroid | SQS/FDFT1 | medium | pass |
| Rnatscaffold_320084850 | Steroid | SQS/FDFT1 | low | borderline |
| Rnatscaffold_40096000 | Steroid | SQS/FDFT1 | low | borderline |