PlantSME Plant secondary metabolism enzyme database

Rosa rugosa (rosa_rugosa)

Imported from atlas release summary for Rosa rugosa.

2079
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 587 18 UGT (243) View species results
Alkaloid pathway 492 21 7DLGT (134) View species results
Phenylpropanoid pathway 398 11 POD (135) View species results
Flavonoid pathway 293 9 UFGT (234) View species results
Rosmarinic acid pathway 168 7 C4H (73) View species results
Steroid pathway 141 13 CAS (61) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1791 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Rrug02G0057410.1 Flavonoid F3H medium borderline
Rrug02G0057470.1 Flavonoid F3H medium borderline
Rrug02G0057490.1 Flavonoid F3H medium borderline
Rrug02G0057500.1 Flavonoid F3H medium borderline
Rrug02G0057520.1 Flavonoid F3H medium borderline
Rrug02G0060830.1 Flavonoid F3H medium borderline
Rrug03G0015480.1 Flavonoid F3H medium borderline
Rrug03G0016820.1 Flavonoid F3H medium pass
Rrug03G0016840.1 Flavonoid F3H medium borderline
Rrug03G0018430.1 Flavonoid F3H low borderline
Rrug03G0018480.1 Flavonoid F3H low borderline
Rrug03G0023270.1 Flavonoid F3H medium borderline
Rrug03G0026790.1 Flavonoid F3H medium borderline
Rrug03G0026820.1 Flavonoid F3H medium pass
Rrug03G0026830.1 Flavonoid F3H medium borderline
Rrug03G0028540.1 Flavonoid F3H medium borderline
Rrug03G0028560.1 Flavonoid F3H medium borderline
Rrug03G0029340.1 Flavonoid F3H low borderline
Rrug03G0031290.1 Flavonoid F3H medium borderline
Rrug03G0031300.1 Flavonoid F3H medium borderline
Rrug03G0031310.1 Flavonoid F3H medium borderline
Rrug03G0031320.1 Flavonoid F3H medium borderline
Rrug03G0031330.1 Flavonoid F3H medium borderline
Rrug03G0031340.1 Flavonoid F3H medium borderline
Rrug03G0031350.1 Flavonoid F3H medium borderline
Rrug03G0031370.1 Flavonoid F3H low borderline
Rrug03G0033960.1 Flavonoid F3H medium borderline
Rrug03G0041240.1 Flavonoid F3H medium borderline
Rrug03G0043680.1 Flavonoid F3H medium borderline
Rrug03G0045470.1 Flavonoid F3H medium borderline
Rrug03G0050180.1 Flavonoid F3H medium borderline
Rrug04G0006510.1 Flavonoid F3H medium borderline
Rrug04G0012680.1 Flavonoid F3H medium borderline
Rrug04G0015130.1 Flavonoid F3H medium borderline
Rrug04G0015140.1 Flavonoid F3H medium borderline
Rrug04G0015160.1 Flavonoid F3H medium borderline
Rrug04G0015190.1 Flavonoid F3H medium borderline
Rrug04G0019560.1 Flavonoid F3H medium borderline
Rrug04G0022720.1 Flavonoid F3H medium borderline
Rrug04G0022740.1 Flavonoid F3H medium borderline
Rrug04G0022790.1 Flavonoid F3H medium borderline
Rrug04G0022900.1 Flavonoid F3H medium borderline
Rrug04G0033240.1 Flavonoid F3H medium pass
Rrug04G0038710.1 Flavonoid F3H medium pass
Rrug05G0001230.1 Flavonoid F3H medium borderline
Rrug05G0003110.1 Flavonoid F3H low borderline
Rrug05G0003130.1 Flavonoid F3H low borderline
Rrug05G0003150.1 Flavonoid F3H low borderline
Rrug05G0003160.1 Flavonoid F3H low borderline
Rrug05G0011730.1 Flavonoid F3H medium borderline