PlantSME Plant secondary metabolism enzyme database

Schistidium cupulare (schistidium_cupulare)

Imported from atlas release summary for Schistidium cupulare.

552
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 151 11 POD (77) View species results
Terpenoid pathway 141 19 BAHD (61) View species results
Alkaloid pathway 109 18 NMT (21) View species results
Flavonoid pathway 59 8 UFGT (18) View species results
Rosmarinic acid pathway 56 7 C4H (19) View species results
Steroid pathway 36 12 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 605 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Scup1869290203580 Rosmarinic Acid C4H low borderline
Scup1869290203590 Rosmarinic Acid C4H low borderline
Scup1870110207180 Rosmarinic Acid C4H low borderline
Scup1870290208190 Rosmarinic Acid C4H low borderline
Scup1870900211490 Rosmarinic Acid C4H low borderline
Scup1871240212760 Rosmarinic Acid C4H low borderline
Scup1871490214110 Rosmarinic Acid C4H low borderline
Scup1871610214530 Rosmarinic Acid C4H medium pass
Scup1872170216660 Rosmarinic Acid C4H low borderline
Scup1872800219640 Rosmarinic Acid C4H low borderline
Scup1873260221370 Rosmarinic Acid C4H low borderline
Scup1873890222930 Rosmarinic Acid C4H low borderline
Scup1876810225480 Rosmarinic Acid C4H medium pass
Scup1877720225940 Rosmarinic Acid C4H low borderline
Scup1352560007050 Rosmarinic Acid CPR medium pass
Scup1713690026450 Rosmarinic Acid CPR medium pass
Scup1826370089350 Rosmarinic Acid CPR medium pass
Scup1828390093220 Rosmarinic Acid CPR medium pass
Scup1890680226130 Rosmarinic Acid CPR medium pass
Scup189630226230 Rosmarinic Acid CPR low borderline
Scup1789750053520 Rosmarinic Acid HPPR low borderline
Scup1868990202150 Rosmarinic Acid HPPR medium pass
Scup1640390019740 Rosmarinic Acid PAL high pass
Scup1812350073890 Rosmarinic Acid PAL high pass
Scup1817630078060 Rosmarinic Acid PAL high pass
Scup1829110094650 Rosmarinic Acid PAL high pass
Scup1842800120000 Rosmarinic Acid PAL high pass
Scup1844090123090 Rosmarinic Acid PAL high pass
Scup1844090123120 Rosmarinic Acid PAL high pass
Scup1869230203320 Rosmarinic Acid PAL high pass
Scup1873470222130 Rosmarinic Acid PAL high pass
Scup1376970008100 Rosmarinic Acid RAS medium pass
Scup1717280028490 Rosmarinic Acid RAS low borderline
Scup1780750047410 Rosmarinic Acid RAS medium pass
Scup1785040050300 Rosmarinic Acid RAS medium pass
Scup1794830059350 Rosmarinic Acid RAS low borderline
Scup1813550074430 Rosmarinic Acid RAS medium pass
Scup1823640086490 Rosmarinic Acid RAS medium pass
Scup1829490094970 Rosmarinic Acid RAS medium pass
Scup1838740111930 Rosmarinic Acid RAS low borderline
Scup1838740111940 Rosmarinic Acid RAS low borderline
Scup1854070148510 Rosmarinic Acid RAS low borderline
Scup1869330203900 Rosmarinic Acid RAS medium pass
Scup1808560069200 Rosmarinic Acid TAT medium pass
Scup1810890072170 Rosmarinic Acid TAT medium pass
Scup1855850154720 Rosmarinic Acid TAT medium pass