Schistidium cupulare (schistidium_cupulare)
Imported from atlas release summary for Schistidium cupulare.
552
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
552
Candidate Genes
C4H
7.12%
C3'H/CYP98A
5.81%
BAHD
5.81%
POD
5.49%
4CL
4.7%
CYP76
4.7%
NMT
4.64%
IFS
3.27%
Other Families
58.46%
More Families (95)
STR
45
2.94%
T3O
41
2.68%
BR6OX2/CYP85A2
37
2.42%
IFR
35
2.29%
F3H
35
2.29%
DWF4/CYP90B1
34
2.22%
F3'H/CYP75B
30
1.96%
GS
28
1.83%
CODM/T6ODM
28
1.83%
PAL
27
1.76%
IO
23
1.5%
UGT
22
1.44%
CYP71
21
1.37%
7DLGT
20
1.31%
PYKS
20
1.31%
UFGT
20
1.31%
CAD
18
1.18%
SMT1/SMT2/SMT3
18
1.18%
G8O/G8H
16
1.05%
H6H
14
0.91%
F3'5'H/CYP75A
14
0.91%
T16H
13
0.85%
SLS
12
0.78%
LAC
12
0.78%
CSE
12
0.78%
RAS
12
0.78%
TRI/TRII
11
0.72%
FNS
11
0.72%
HCT
11
0.72%
COMT
11
0.72%
CHS
10
0.65%
CAS
10
0.65%
SGD
9
0.59%
8HGO
8
0.52%
CCR
8
0.52%
SQS/FDFT1
8
0.52%
CYP719
7
0.46%
7DLH
7
0.46%
CNMT
7
0.46%
CYP90D1
7
0.46%
COR
6
0.39%
16OMT
6
0.39%
ANR
6
0.39%
CPR
6
0.39%
BR6OX1/CYP85A1
6
0.39%
CPD/CYP90A1
6
0.39%
MVK
6
0.39%
MPO
5
0.33%
PMT
5
0.33%
TDC
5
0.33%
NCS
5
0.33%
F5H/CYP84A
5
0.33%
SQE
5
0.33%
DWF5
5
0.33%
GGPPS
5
0.33%
BBE
4
0.26%
ANS/LDOX
4
0.26%
DFR
4
0.26%
DET2
4
0.26%
AACT
4
0.26%
ADC
3
0.2%
LAMT
3
0.2%
CHI
3
0.2%
TAT
3
0.2%
CYP51G1
3
0.2%
MCT/IspD
3
0.2%
MVD
3
0.2%
6OMT_4OMT_SOMT
2
0.13%
TYDC_DDC
2
0.13%
CCoAOMT
2
0.13%
HPPR
2
0.13%
SMO1/SMO2
2
0.13%
ROT3/CYP90C1
2
0.13%
HYD1
2
0.13%
MDS/IspF
2
0.13%
HDR/IspH
2
0.13%
CMK/IspE
2
0.13%
FPPS
2
0.13%
DXR
2
0.13%
XMT_MXMT_DXMT
1
0.07%
CYP80B1
1
0.07%
ISY
1
0.07%
GES
1
0.07%
FLS
1
0.07%
FK
1
0.07%
CPI1
1
0.07%
DWF7
1
0.07%
DWF1
1
0.07%
HDS/IspG
1
0.07%
PMK
1
0.07%
DXS
1
0.07%
HMGR
1
0.07%
HMGS
1
0.07%
IDI
1
0.07%
TPS
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 151 | 11 | POD (77) | View species results |
| Terpenoid pathway | 141 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 109 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 59 | 8 | UFGT (18) | View species results |
| Rosmarinic acid pathway | 56 | 7 | C4H (19) | View species results |
| Steroid pathway | 36 | 12 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 605 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 112 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Scup1863180177580 | Steroid | DWF4/CYP90B1 | low | borderline |
| Scup1863450178560 | Steroid | DWF4/CYP90B1 | low | borderline |
| Scup1865810187780 | Steroid | DWF4/CYP90B1 | medium | borderline |
| Scup1865910188010 | Steroid | DWF4/CYP90B1 | low | borderline |
| Scup1868130198450 | Steroid | DWF4/CYP90B1 | low | borderline |
| Scup1870900211490 | Steroid | DWF4/CYP90B1 | medium | borderline |
| Scup1871490214120 | Steroid | DWF4/CYP90B1 | low | borderline |
| Scup1872170216660 | Steroid | DWF4/CYP90B1 | low | borderline |
| Scup1872240217090 | Steroid | DWF4/CYP90B1 | medium | borderline |
| Scup1717240028460 | Steroid | DWF5 | medium | pass |
| Scup1726110031270 | Steroid | DWF5 | medium | pass |
| Scup1820110080630 | Steroid | DWF5 | medium | pass |
| Scup1855280152120 | Steroid | DWF5 | medium | pass |
| Scup1863890180290 | Steroid | DWF5 | high | pass |
| Scup1821970083890 | Steroid | DWF7 | medium | pass |
| Scup1785530050880 | Steroid | FK | high | pass |
| Scup1852010143620 | Steroid | HYD1 | high | pass |
| Scup1863900180380 | Steroid | HYD1 | low | borderline |
| Scup1844690124940 | Steroid | ROT3/CYP90C1 | low | borderline |
| Scup1872800219640 | Steroid | ROT3/CYP90C1 | medium | borderline |
| Scup1545360014110 | Steroid | SMO1/SMO2 | medium | pass |
| Scup1855060151260 | Steroid | SMO1/SMO2 | medium | pass |
| Scup1151020001280 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1353790007210 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1459950009180 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1739710031750 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1765270040180 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1827510091230 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1827820091580 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1828090092340 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Scup1828950094400 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Scup1839150113430 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Scup1842620119650 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Scup1845890127060 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1849030135250 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1851480141800 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Scup1854360149380 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1859210165160 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1861030171180 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Scup1864750184050 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Scup1548060014670 | Steroid | SQE | low | borderline |
| Scup1637940019070 | Steroid | SQE | low | borderline |
| Scup1866590191160 | Steroid | SQE | medium | pass |
| Scup1870270207990 | Steroid | SQE | medium | pass |
| Scup1870890211340 | Steroid | SQE | low | borderline |
| Scup1771450045170 | Steroid | SQS/FDFT1 | high | pass |
| Scup1795370059890 | Steroid | SQS/FDFT1 | low | borderline |
| Scup1843930122570 | Steroid | SQS/FDFT1 | low | borderline |
| Scup1849290136120 | Steroid | SQS/FDFT1 | medium | pass |
| Scup1851020140830 | Steroid | SQS/FDFT1 | high | pass |