Schistidium cupulare (schistidium_cupulare)
Imported from atlas release summary for Schistidium cupulare.
829
Candidate Protein Records
552
Pathway-Level Records
1531
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1531
Family-Level Calls
C4H
7.12%
C3'H/CYP98A
5.81%
BAHD
5.81%
POD
5.49%
4CL
4.7%
CYP76
4.7%
NMT
4.64%
IFS
3.27%
Other Families
58.46%
More Families (95)
STR
45
2.94%
T3O
41
2.68%
BR6OX2/CYP85A2
37
2.42%
IFR
35
2.29%
F3H
35
2.29%
DWF4/CYP90B1
34
2.22%
F3'H/CYP75B
30
1.96%
GS
28
1.83%
CODM/T6ODM
28
1.83%
PAL
27
1.76%
IO
23
1.5%
UGT
22
1.44%
CYP71
21
1.37%
7DLGT
20
1.31%
PYKS
20
1.31%
UFGT
20
1.31%
CAD
18
1.18%
SMT1/SMT2/SMT3
18
1.18%
G8O/G8H
16
1.05%
H6H
14
0.91%
F3'5'H/CYP75A
14
0.91%
T16H
13
0.85%
SLS
12
0.78%
LAC
12
0.78%
CSE
12
0.78%
RAS
12
0.78%
TRI/TRII
11
0.72%
FNS
11
0.72%
HCT
11
0.72%
COMT
11
0.72%
CHS
10
0.65%
CAS
10
0.65%
SGD
9
0.59%
8HGO
8
0.52%
CCR
8
0.52%
SQS/FDFT1
8
0.52%
CYP719
7
0.46%
7DLH
7
0.46%
CNMT
7
0.46%
CYP90D1
7
0.46%
COR
6
0.39%
16OMT
6
0.39%
ANR
6
0.39%
CPR
6
0.39%
BR6OX1/CYP85A1
6
0.39%
CPD/CYP90A1
6
0.39%
MVK
6
0.39%
MPO
5
0.33%
PMT
5
0.33%
TDC
5
0.33%
NCS
5
0.33%
F5H/CYP84A
5
0.33%
SQE
5
0.33%
DWF5
5
0.33%
GGPPS
5
0.33%
BBE
4
0.26%
ANS/LDOX
4
0.26%
DFR
4
0.26%
DET2
4
0.26%
AACT
4
0.26%
ADC
3
0.2%
LAMT
3
0.2%
CHI
3
0.2%
TAT
3
0.2%
CYP51G1
3
0.2%
MCT/IspD
3
0.2%
MVD
3
0.2%
6OMT_4OMT_SOMT
2
0.13%
TYDC_DDC
2
0.13%
CCoAOMT
2
0.13%
HPPR
2
0.13%
SMO1/SMO2
2
0.13%
ROT3/CYP90C1
2
0.13%
HYD1
2
0.13%
MDS/IspF
2
0.13%
HDR/IspH
2
0.13%
CMK/IspE
2
0.13%
FPPS
2
0.13%
DXR
2
0.13%
XMT_MXMT_DXMT
1
0.07%
CYP80B1
1
0.07%
ISY
1
0.07%
GES
1
0.07%
FLS
1
0.07%
FK
1
0.07%
CPI1
1
0.07%
DWF7
1
0.07%
DWF1
1
0.07%
HDS/IspG
1
0.07%
PMK
1
0.07%
DXS
1
0.07%
HMGR
1
0.07%
HMGS
1
0.07%
IDI
1
0.07%
TPS
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 151 | 11 | POD (77) | View species results |
| Terpenoid pathway | 141 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 109 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 59 | 8 | UFGT (18) | View species results |
| Rosmarinic acid pathway | 56 | 7 | C4H (19) | View species results |
| Steroid pathway | 36 | 12 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 605 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 112 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Scup1860230168770 | Alkaloid | T3O | medium | pass |
| Scup1861530172410 | Alkaloid | T3O | medium | borderline |
| Scup1865810187780 | Alkaloid | T3O | medium | borderline |
| Scup1867610196320 | Alkaloid | T3O | low | borderline |
| Scup1870340208460 | Alkaloid | T3O | low | borderline |
| Scup1870900211490 | Alkaloid | T3O | medium | pass |
| Scup1872170216660 | Alkaloid | T3O | medium | pass |
| Scup1872240217090 | Alkaloid | T3O | medium | pass |
| Scup1872800219640 | Alkaloid | T3O | medium | pass |
| Scup1873260221370 | Alkaloid | T3O | low | borderline |
| Scup1876810225480 | Alkaloid | T3O | medium | borderline |
| Scup1801350062360 | Alkaloid | TDC | low | borderline |
| Scup1807460067950 | Alkaloid | TDC | low | borderline |
| Scup1835540105590 | Alkaloid | TDC | medium | borderline |
| Scup1857360159920 | Alkaloid | TDC | low | borderline |
| Scup1866570190970 | Alkaloid | TDC | low | borderline |
| Scup1192370003380 | Alkaloid | TRI/TRII | medium | pass |
| Scup1365580007660 | Alkaloid | TRI/TRII | low | borderline |
| Scup1536480010770 | Alkaloid | TRI/TRII | medium | pass |
| Scup1539330012020 | Alkaloid | TRI/TRII | medium | pass |
| Scup1836490107370 | Alkaloid | TRI/TRII | low | borderline |
| Scup1843520121810 | Alkaloid | TRI/TRII | medium | pass |
| Scup1847750131320 | Alkaloid | TRI/TRII | low | borderline |
| Scup1850590139210 | Alkaloid | TRI/TRII | medium | pass |
| Scup1851470141760 | Alkaloid | TRI/TRII | medium | pass |
| Scup1861400172280 | Alkaloid | TRI/TRII | medium | pass |
| Scup1866990192860 | Alkaloid | TRI/TRII | low | borderline |
| Scup1835540105600 | Alkaloid | TYDC_DDC | medium | borderline |
| Scup1868130198430 | Alkaloid | TYDC_DDC | medium | borderline |
| Scup1668050021750 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Scup1630630017310 | Flavonoid | 4CL | low | borderline |
| Scup1667670021540 | Flavonoid | 4CL | medium | pass |
| Scup1740300031890 | Flavonoid | 4CL | low | borderline |
| Scup1765440040270 | Flavonoid | 4CL | medium | pass |
| Scup1766080041120 | Flavonoid | 4CL | low | borderline |
| Scup1766080041130 | Flavonoid | 4CL | medium | pass |
| Scup1817400077600 | Flavonoid | 4CL | low | borderline |
| Scup1821000082490 | Flavonoid | 4CL | medium | pass |
| Scup1825020087740 | Flavonoid | 4CL | medium | pass |
| Scup1828270092870 | Flavonoid | 4CL | medium | pass |
| Scup1835640105830 | Flavonoid | 4CL | low | borderline |
| Scup1836090107100 | Flavonoid | 4CL | low | borderline |
| Scup1841850118020 | Flavonoid | 4CL | low | borderline |
| Scup1844690125030 | Flavonoid | 4CL | low | borderline |
| Scup1846360128400 | Flavonoid | 4CL | medium | pass |
| Scup1851880143090 | Flavonoid | 4CL | medium | pass |
| Scup1863920180610 | Flavonoid | 4CL | medium | pass |
| Scup1866410190210 | Flavonoid | 4CL | medium | pass |
| Scup1868780201440 | Flavonoid | 4CL | low | borderline |
| Scup1870320208440 | Flavonoid | 4CL | low | borderline |