Sclerocarya birrea (sclerocarya_birrea)
Imported from atlas release summary for Sclerocarya birrea.
1306
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1306
Candidate Genes
C4H
6.48%
C3'H/CYP98A
6.13%
UGT
5.1%
7DLGT
4.69%
BAHD
4.58%
UFGT
4.29%
IFS
4.21%
CYP76
4.18%
Other Families
60.34%
More Families (98)
POD
126
3.63%
T3O
107
3.08%
4CL
99
2.85%
DWF4/CYP90B1
99
2.85%
F3H
77
2.22%
BR6OX2/CYP85A2
68
1.96%
F3'H/CYP75B
67
1.93%
CAS
58
1.67%
CAD
56
1.61%
NMT
55
1.58%
CODM/T6ODM
52
1.5%
TPS
50
1.44%
GES
47
1.35%
G8O/G8H
46
1.32%
CYP71
42
1.21%
SMT1/SMT2/SMT3
39
1.12%
F5H/CYP84A
38
1.09%
CSE
38
1.09%
H6H
37
1.07%
FNS
37
1.07%
IFR
36
1.04%
F3'5'H/CYP75A
34
0.98%
LAC
34
0.98%
TRI/TRII
32
0.92%
HCT
31
0.89%
STR
30
0.86%
7DLH
30
0.86%
T16H
28
0.81%
PYKS
28
0.81%
SLS
27
0.78%
IO
27
0.78%
CYP90D1
26
0.75%
BR6OX1/CYP85A1
26
0.75%
SGD
25
0.72%
COMT
25
0.72%
TAT
22
0.63%
PMT
20
0.58%
GS
20
0.58%
RAS
20
0.58%
CPD/CYP90A1
17
0.49%
CYP719
16
0.46%
NCS
16
0.46%
CHS
16
0.46%
16OMT
15
0.43%
ANS/LDOX
15
0.43%
CCR
14
0.4%
COR
13
0.37%
CNMT
12
0.35%
LAMT
12
0.35%
DFR
12
0.35%
ANR
11
0.32%
CYP51G1
10
0.29%
CYP80B1
9
0.26%
8HGO
9
0.26%
PAL
9
0.26%
HPPR
8
0.23%
ROT3/CYP90C1
8
0.23%
AACT
8
0.23%
FPPS
8
0.23%
DET2
7
0.2%
6OMT_4OMT_SOMT
5
0.14%
MPO
5
0.14%
TYDC_DDC
5
0.14%
CPR
5
0.14%
GGPPS
5
0.14%
ODC
4
0.12%
CCoAOMT
4
0.12%
SQE
4
0.12%
SQS/FDFT1
4
0.12%
ISY
3
0.09%
CYP80F1
3
0.09%
BBE
3
0.09%
CHI
3
0.09%
SMO1/SMO2
3
0.09%
CMK/IspE
3
0.09%
MVD
3
0.09%
MVK
3
0.09%
FLS
2
0.06%
HMGS
2
0.06%
HMGR
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
TDC
1
0.03%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
DWF7
1
0.03%
DWF1
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
DXS
1
0.03%
IDI
1
0.03%
MCT/IspD
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 384 | 17 | UGT (140) | View species results |
| Alkaloid pathway | 284 | 24 | 7DLGT (58) | View species results |
| Phenylpropanoid pathway | 257 | 12 | POD (111) | View species results |
| Flavonoid pathway | 203 | 13 | UFGT (134) | View species results |
| Rosmarinic acid pathway | 95 | 7 | C4H (42) | View species results |
| Steroid pathway | 83 | 10 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1457 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 210 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sbirscaffold1897_cov3120052770 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Sbirscaffold19_cov3440055610 | Terpenoid | BAHD | medium | pass | BAHD__00018__sp_I1MRZ6_DAT32_SOYBN |
| Sbirscaffold19_cov3440057200 | Terpenoid | BAHD | medium | pass | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Sbirscaffold19_cov3440057660 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sbirscaffold2082_cov3430060820 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Sbirscaffold2113_cov3040061540 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Sbirscaffold2130_cov3280062690 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| Sbirscaffold2217_cov3130063720 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sbirscaffold228_cov1770065620 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold2328_cov3020066130 | Terpenoid | BAHD | medium | pass | BAHD__00030__sp_O80816_GLC_ARATH |
| Sbirscaffold2328_cov3020066440 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Sbirscaffold2398_cov2860066850 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Sbirscaffold2469_cov3310067700 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sbirscaffold2620_cov2840070840 | Terpenoid | BAHD | low | borderline | BAHD__00033__sp_P0DXG0_AT_STRYX |
| Sbirscaffold264_cov3190071310 | Terpenoid | BAHD | medium | pass | BAHD__00097__sp_Q9ZV87_NAPES_ARATH |
| Sbirscaffold264_cov3190071540 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Sbirscaffold2722_cov2950072560 | Terpenoid | BAHD | medium | pass | BAHD__00095__sp_Q9SZ58_BRAT1_ARATH |
| Sbirscaffold2805_cov3500074300 | Terpenoid | BAHD | low | borderline | BAHD__00032__sp_P0DO84_AT_STRNX |
| Sbirscaffold2805_cov3500074310 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Sbirscaffold2838_cov3390075450 | Terpenoid | BAHD | low | borderline | BAHD__00032__sp_P0DO84_AT_STRNX |
| Sbirscaffold2838_cov3390075480 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Sbirscaffold2838_cov3390075780 | Terpenoid | BAHD | medium | pass | BAHD__00050__sp_Q6DR03_ZDHC3_ARATH |
| Sbirscaffold303_cov3370079750 | Terpenoid | BAHD | medium | pass | BAHD__00071__sp_Q9CAY3_GPAT5_ARATH |
| Sbirscaffold305_cov3400080890 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Sbirscaffold3079_cov3350083590 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sbirscaffold307_cov3350084330 | Terpenoid | BAHD | low | borderline | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| Sbirscaffold3100_cov3050085600 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| Sbirscaffold315_cov3320086040 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold315_cov3320086050 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold315_cov3320086060 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold335_cov3130088340 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Sbirscaffold3416_cov3050089660 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Sbirscaffold349_cov3390092530 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Sbirscaffold379_cov3010095490 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| Sbirscaffold3_cov3440099320 | Terpenoid | BAHD | medium | pass | BAHD__00095__sp_Q9SZ58_BRAT1_ARATH |
| Sbirscaffold4034_cov3240100890 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold406_cov3420103440 | Terpenoid | BAHD | low | borderline | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| Sbirscaffold410_cov3230106040 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold410_cov3230106050 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold414_cov3040106950 | Terpenoid | BAHD | medium | pass | BAHD__00004__sp_A0A0M4FCN7_RAM2_PETHY |
| Sbirscaffold4183_cov3180107390 | Terpenoid | BAHD | low | borderline | BAHD__00032__sp_P0DO84_AT_STRNX |
| Sbirscaffold438_cov3330109410 | Terpenoid | BAHD | low | borderline | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Sbirscaffold438_cov3330109420 | Terpenoid | BAHD | low | borderline | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Sbirscaffold438_cov3330109440 | Terpenoid | BAHD | low | borderline | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Sbirscaffold438_cov3330110160 | Terpenoid | BAHD | low | borderline | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| Sbirscaffold4632_cov2830111600 | Terpenoid | BAHD | low | borderline | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| Sbirscaffold4663_cov3410111690 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sbirscaffold487_cov3340112960 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sbirscaffold487_cov3340113320 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Sbirscaffold489_cov2480114150 | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |