Sclerocarya birrea (sclerocarya_birrea)
Imported from atlas release summary for Sclerocarya birrea.
1306
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1306
Candidate Genes
C4H
6.48%
C3'H/CYP98A
6.13%
UGT
5.1%
7DLGT
4.69%
BAHD
4.58%
UFGT
4.29%
IFS
4.21%
CYP76
4.18%
Other Families
60.34%
More Families (98)
POD
126
3.63%
T3O
107
3.08%
4CL
99
2.85%
DWF4/CYP90B1
99
2.85%
F3H
77
2.22%
BR6OX2/CYP85A2
68
1.96%
F3'H/CYP75B
67
1.93%
CAS
58
1.67%
CAD
56
1.61%
NMT
55
1.58%
CODM/T6ODM
52
1.5%
TPS
50
1.44%
GES
47
1.35%
G8O/G8H
46
1.32%
CYP71
42
1.21%
SMT1/SMT2/SMT3
39
1.12%
F5H/CYP84A
38
1.09%
CSE
38
1.09%
H6H
37
1.07%
FNS
37
1.07%
IFR
36
1.04%
F3'5'H/CYP75A
34
0.98%
LAC
34
0.98%
TRI/TRII
32
0.92%
HCT
31
0.89%
STR
30
0.86%
7DLH
30
0.86%
T16H
28
0.81%
PYKS
28
0.81%
SLS
27
0.78%
IO
27
0.78%
CYP90D1
26
0.75%
BR6OX1/CYP85A1
26
0.75%
SGD
25
0.72%
COMT
25
0.72%
TAT
22
0.63%
PMT
20
0.58%
GS
20
0.58%
RAS
20
0.58%
CPD/CYP90A1
17
0.49%
CYP719
16
0.46%
NCS
16
0.46%
CHS
16
0.46%
16OMT
15
0.43%
ANS/LDOX
15
0.43%
CCR
14
0.4%
COR
13
0.37%
CNMT
12
0.35%
LAMT
12
0.35%
DFR
12
0.35%
ANR
11
0.32%
CYP51G1
10
0.29%
CYP80B1
9
0.26%
8HGO
9
0.26%
PAL
9
0.26%
HPPR
8
0.23%
ROT3/CYP90C1
8
0.23%
AACT
8
0.23%
FPPS
8
0.23%
DET2
7
0.2%
6OMT_4OMT_SOMT
5
0.14%
MPO
5
0.14%
TYDC_DDC
5
0.14%
CPR
5
0.14%
GGPPS
5
0.14%
ODC
4
0.12%
CCoAOMT
4
0.12%
SQE
4
0.12%
SQS/FDFT1
4
0.12%
ISY
3
0.09%
CYP80F1
3
0.09%
BBE
3
0.09%
CHI
3
0.09%
SMO1/SMO2
3
0.09%
CMK/IspE
3
0.09%
MVD
3
0.09%
MVK
3
0.09%
FLS
2
0.06%
HMGS
2
0.06%
HMGR
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
TDC
1
0.03%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
DWF7
1
0.03%
DWF1
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
DXS
1
0.03%
IDI
1
0.03%
MCT/IspD
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 384 | 17 | UGT (140) | View species results |
| Alkaloid pathway | 284 | 24 | 7DLGT (58) | View species results |
| Phenylpropanoid pathway | 257 | 12 | POD (111) | View species results |
| Flavonoid pathway | 203 | 13 | UFGT (134) | View species results |
| Rosmarinic acid pathway | 95 | 7 | C4H (42) | View species results |
| Steroid pathway | 83 | 10 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1457 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 210 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sbirscaffold102_cov3260003730 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Sbirscaffold1054_cov3270004340 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Sbirscaffold1160_cov2590008500 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Sbirscaffold1212_cov3400013550 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Sbirscaffold1213_cov3210014390 | Alkaloid | NMT | medium | borderline | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| Sbirscaffold1213_cov3210014410 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Sbirscaffold131_cov3440019220 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Sbirscaffold1347_cov3210022820 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Sbirscaffold143_cov3320025600 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Sbirscaffold143_cov3320026310 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Sbirscaffold1462_cov3210027070 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Sbirscaffold147_cov3280028320 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Sbirscaffold1492_cov3190030230 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Sbirscaffold150_cov3420031100 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Sbirscaffold161_cov3410037130 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Sbirscaffold1648_cov3350037710 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Sbirscaffold165_cov3020038180 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Sbirscaffold184_cov3390046320 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Sbirscaffold1897_cov3120052870 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Sbirscaffold19_cov3440057500 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Sbirscaffold214_cov3050062870 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Sbirscaffold2355_cov2230066670 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Sbirscaffold2643_cov2960071060 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Sbirscaffold266_cov3220071800 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Sbirscaffold266_cov3220071830 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| Sbirscaffold2785_cov2690073220 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Sbirscaffold2838_cov3390075000 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Sbirscaffold305_cov3400080490 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Sbirscaffold305_cov3400082150 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| Sbirscaffold307_cov3350084940 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Sbirscaffold317_cov3140086990 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Sbirscaffold3416_cov3050089890 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Sbirscaffold3894_cov2010096310 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Sbirscaffold3_cov3440099130 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Sbirscaffold4070_cov2960104220 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Sbirscaffold409_cov3240105250 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Sbirscaffold4476_cov3030111220 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| Sbirscaffold523_cov3420118690 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Sbirscaffold523_cov3420120470 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Sbirscaffold561_cov3230126190 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Sbirscaffold57_cov3190129720 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Sbirscaffold57_cov3190129950 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Sbirscaffold59474_cov3200132400 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Sbirscaffold60004_cov2970148790 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| Sbirscaffold60011_cov3430150070 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Sbirscaffold60077_cov3190153970 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Sbirscaffold726_cov3080163650 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Sbirscaffold755_cov3360166670 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Sbirscaffold87_cov3360173600 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Sbirscaffold88_cov3380174170 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |